Protein–RNA interactions for Protein: Q920F6

Smc1b, Structural maintenance of chromosomes protein 1B, mousemouse

Predictions only

Length 1,248 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1bQ920F6 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC31.71■■■□□ 2.67
Smc1bQ920F6 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC31.69■■■□□ 2.66
Smc1bQ920F6 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC31.66■■■□□ 2.66
Smc1bQ920F6 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC31.66■■■□□ 2.66
Smc1bQ920F6 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC31.6■■■□□ 2.65
Smc1bQ920F6 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Smc1bQ920F6 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC31.58■■■□□ 2.65
Smc1bQ920F6 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
Smc1bQ920F6 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC31.55■■■□□ 2.64
Smc1bQ920F6 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
Smc1bQ920F6 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
Smc1bQ920F6 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Smc1bQ920F6 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
Smc1bQ920F6 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC31.46■■■□□ 2.63
Smc1bQ920F6 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC31.46■■■□□ 2.63
Smc1bQ920F6 Zfp131-205ENSMUST00000223812 663 ntBASIC31.43■■■□□ 2.62
Smc1bQ920F6 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC31.41■■■□□ 2.62
Smc1bQ920F6 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
Smc1bQ920F6 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
Smc1bQ920F6 Gm42596-201ENSMUST00000196305 1958 ntBASIC31.28■■■□□ 2.6
Smc1bQ920F6 Gm10524-201ENSMUST00000181931 1893 ntBASIC31.27■■■□□ 2.6
Smc1bQ920F6 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Smc1bQ920F6 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
Smc1bQ920F6 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Smc1bQ920F6 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
Smc1bQ920F6 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
Smc1bQ920F6 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC31.22■■■□□ 2.59
Smc1bQ920F6 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
Smc1bQ920F6 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Smc1bQ920F6 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
Smc1bQ920F6 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
Smc1bQ920F6 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Smc1bQ920F6 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC31.16■■■□□ 2.58
Smc1bQ920F6 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC31.15■■■□□ 2.58
Smc1bQ920F6 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC31.15■■■□□ 2.58
Smc1bQ920F6 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Smc1bQ920F6 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC31.14■■■□□ 2.57
Smc1bQ920F6 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Smc1bQ920F6 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC31.1■■■□□ 2.57
Smc1bQ920F6 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.57
Smc1bQ920F6 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
Smc1bQ920F6 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
Smc1bQ920F6 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
Smc1bQ920F6 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC31.02■■■□□ 2.56
Smc1bQ920F6 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
Smc1bQ920F6 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC31.01■■■□□ 2.55
Smc1bQ920F6 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Smc1bQ920F6 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC30.96■■■□□ 2.55
Smc1bQ920F6 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
Smc1bQ920F6 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
Smc1bQ920F6 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
Smc1bQ920F6 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
Smc1bQ920F6 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC30.84■■■□□ 2.53
Smc1bQ920F6 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
Smc1bQ920F6 AC166822.3-201ENSMUST00000227394 661 ntBASIC30.83■■■□□ 2.53
Smc1bQ920F6 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
Smc1bQ920F6 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
Smc1bQ920F6 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC30.8■■■□□ 2.52
Smc1bQ920F6 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC30.78■■■□□ 2.52
Smc1bQ920F6 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
Smc1bQ920F6 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Smc1bQ920F6 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC30.62■■■□□ 2.49
Smc1bQ920F6 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
Smc1bQ920F6 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC30.58■■■□□ 2.49
Smc1bQ920F6 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
Smc1bQ920F6 CT025624.2-201ENSMUST00000223609 1909 ntBASIC30.55■■■□□ 2.48
Smc1bQ920F6 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Smc1bQ920F6 Gm16148-201ENSMUST00000119653 893 ntBASIC30.5■■■□□ 2.47
Smc1bQ920F6 AL845457.1-201ENSMUST00000197244 68 ntBASIC30.5■■■□□ 2.47
Smc1bQ920F6 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
Smc1bQ920F6 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC30.47■■■□□ 2.47
Smc1bQ920F6 Tdp2-203ENSMUST00000223804 1136 ntBASIC30.46■■■□□ 2.47
Smc1bQ920F6 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC30.46■■■□□ 2.47
Smc1bQ920F6 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC30.45■■■□□ 2.47
Smc1bQ920F6 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC30.44■■■□□ 2.46
Smc1bQ920F6 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC30.4■■■□□ 2.46
Smc1bQ920F6 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Smc1bQ920F6 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC30.39■■■□□ 2.46
Smc1bQ920F6 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC30.39■■■□□ 2.46
Smc1bQ920F6 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC30.37■■■□□ 2.45
Smc1bQ920F6 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
Smc1bQ920F6 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Smc1bQ920F6 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
Smc1bQ920F6 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Smc1bQ920F6 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC30.32■■■□□ 2.44
Smc1bQ920F6 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Smc1bQ920F6 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
Smc1bQ920F6 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC30.28■■■□□ 2.44
Smc1bQ920F6 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Smc1bQ920F6 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Smc1bQ920F6 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC30.25■■■□□ 2.43
Smc1bQ920F6 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC30.23■■■□□ 2.43
Smc1bQ920F6 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Smc1bQ920F6 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
Smc1bQ920F6 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
Smc1bQ920F6 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC30.18■■■□□ 2.42
Smc1bQ920F6 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC30.17■■■□□ 2.42
Smc1bQ920F6 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC30.17■■■□□ 2.42
Smc1bQ920F6 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC30.14■■■□□ 2.42
Smc1bQ920F6 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC30.14■■■□□ 2.42
Retrieved 100 of 76,532 protein–RNA pairs in 15.6 ms