Protein–RNA interactions for Protein: Q8VHY0

Cspg4, Chondroitin sulfate proteoglycan 4, mousemouse

Predictions only

Length 2,327 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cspg4Q8VHY0 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Cspg4Q8VHY0 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC24.75■■□□□ 1.55
Cspg4Q8VHY0 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC24.74■■□□□ 1.55
Cspg4Q8VHY0 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC24.73■■□□□ 1.55
Cspg4Q8VHY0 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC24.72■■□□□ 1.55
Cspg4Q8VHY0 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC24.7■■□□□ 1.55
Cspg4Q8VHY0 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
Cspg4Q8VHY0 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
Cspg4Q8VHY0 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC24.67■■□□□ 1.54
Cspg4Q8VHY0 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Cspg4Q8VHY0 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Cspg4Q8VHY0 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC24.64■■□□□ 1.53
Cspg4Q8VHY0 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
Cspg4Q8VHY0 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
Cspg4Q8VHY0 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
Cspg4Q8VHY0 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
Cspg4Q8VHY0 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Cspg4Q8VHY0 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC24.53■■□□□ 1.52
Cspg4Q8VHY0 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC24.52■■□□□ 1.52
Cspg4Q8VHY0 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Cspg4Q8VHY0 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC24.45■■□□□ 1.5
Cspg4Q8VHY0 Gm5987-201ENSMUST00000196433 1151 ntBASIC24.45■■□□□ 1.5
Cspg4Q8VHY0 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC24.43■■□□□ 1.5
Cspg4Q8VHY0 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Cspg4Q8VHY0 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC24.42■■□□□ 1.5
Cspg4Q8VHY0 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Cspg4Q8VHY0 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
Cspg4Q8VHY0 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Cspg4Q8VHY0 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
Cspg4Q8VHY0 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Cspg4Q8VHY0 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
Cspg4Q8VHY0 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Cspg4Q8VHY0 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC24.24■■□□□ 1.47
Cspg4Q8VHY0 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Cspg4Q8VHY0 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Cspg4Q8VHY0 Tdp2-203ENSMUST00000223804 1136 ntBASIC24.21■■□□□ 1.47
Cspg4Q8VHY0 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC24.19■■□□□ 1.46
Cspg4Q8VHY0 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Cspg4Q8VHY0 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Cspg4Q8VHY0 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Cspg4Q8VHY0 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
Cspg4Q8VHY0 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Cspg4Q8VHY0 Gm42596-201ENSMUST00000196305 1958 ntBASIC24.17■■□□□ 1.46
Cspg4Q8VHY0 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Cspg4Q8VHY0 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC24.14■■□□□ 1.45
Cspg4Q8VHY0 AC166822.3-201ENSMUST00000227394 661 ntBASIC24.12■■□□□ 1.45
Cspg4Q8VHY0 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Cspg4Q8VHY0 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC24.1■■□□□ 1.45
Cspg4Q8VHY0 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
Cspg4Q8VHY0 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Cspg4Q8VHY0 CT025624.2-201ENSMUST00000223609 1909 ntBASIC24.04■■□□□ 1.44
Cspg4Q8VHY0 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Cspg4Q8VHY0 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
Cspg4Q8VHY0 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Cspg4Q8VHY0 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC24.01■■□□□ 1.43
Cspg4Q8VHY0 Gm10524-201ENSMUST00000181931 1893 ntBASIC24■■□□□ 1.43
Cspg4Q8VHY0 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
Cspg4Q8VHY0 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Cspg4Q8VHY0 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC23.96■■□□□ 1.43
Cspg4Q8VHY0 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC23.93■■□□□ 1.42
Cspg4Q8VHY0 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
Cspg4Q8VHY0 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Cspg4Q8VHY0 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
Cspg4Q8VHY0 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Cspg4Q8VHY0 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Cspg4Q8VHY0 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
Cspg4Q8VHY0 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Cspg4Q8VHY0 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC23.83■■□□□ 1.41
Cspg4Q8VHY0 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Cspg4Q8VHY0 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Cspg4Q8VHY0 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Cspg4Q8VHY0 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC23.77■■□□□ 1.4
Cspg4Q8VHY0 Gm16148-201ENSMUST00000119653 893 ntBASIC23.77■■□□□ 1.4
Cspg4Q8VHY0 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Cspg4Q8VHY0 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Cspg4Q8VHY0 AL845457.1-201ENSMUST00000197244 68 ntBASIC23.76■■□□□ 1.39
Cspg4Q8VHY0 Gm45855-201ENSMUST00000212546 880 ntBASIC23.73■■□□□ 1.39
Cspg4Q8VHY0 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
Cspg4Q8VHY0 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
Cspg4Q8VHY0 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
Cspg4Q8VHY0 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
Cspg4Q8VHY0 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
Cspg4Q8VHY0 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Cspg4Q8VHY0 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Cspg4Q8VHY0 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Cspg4Q8VHY0 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Cspg4Q8VHY0 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Cspg4Q8VHY0 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Cspg4Q8VHY0 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC23.66■■□□□ 1.38
Cspg4Q8VHY0 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC23.62■■□□□ 1.37
Cspg4Q8VHY0 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Cspg4Q8VHY0 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Cspg4Q8VHY0 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC23.61■■□□□ 1.37
Cspg4Q8VHY0 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
Cspg4Q8VHY0 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
Cspg4Q8VHY0 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
Cspg4Q8VHY0 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC23.55■■□□□ 1.36
Cspg4Q8VHY0 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
Cspg4Q8VHY0 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC23.54■■□□□ 1.36
Cspg4Q8VHY0 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms