Protein–RNA interactions for Protein: Q80SY5

Prpf38b, Pre-mRNA-splicing factor 38B, mousemouse

Known RBP Predictions only

Length 542 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf38bQ80SY5 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC28.84■■■□□ 2.21
Prpf38bQ80SY5 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
Prpf38bQ80SY5 Gm27322-201ENSMUST00000184007 104 ntBASIC28.83■■■□□ 2.21
Prpf38bQ80SY5 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC28.83■■■□□ 2.21
Prpf38bQ80SY5 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC28.82■■■□□ 2.2
Prpf38bQ80SY5 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC28.82■■■□□ 2.2
Prpf38bQ80SY5 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC28.78■■■□□ 2.2
Prpf38bQ80SY5 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
Prpf38bQ80SY5 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
Prpf38bQ80SY5 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC28.72■■■□□ 2.19
Prpf38bQ80SY5 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
Prpf38bQ80SY5 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
Prpf38bQ80SY5 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
Prpf38bQ80SY5 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC28.66■■■□□ 2.18
Prpf38bQ80SY5 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
Prpf38bQ80SY5 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Prpf38bQ80SY5 Gm42596-201ENSMUST00000196305 1958 ntBASIC28.63■■■□□ 2.17
Prpf38bQ80SY5 Gm10524-201ENSMUST00000181931 1893 ntBASIC28.63■■■□□ 2.17
Prpf38bQ80SY5 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Prpf38bQ80SY5 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
Prpf38bQ80SY5 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC28.56■■■□□ 2.16
Prpf38bQ80SY5 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC28.56■■■□□ 2.16
Prpf38bQ80SY5 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
Prpf38bQ80SY5 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
Prpf38bQ80SY5 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Prpf38bQ80SY5 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC28.45■■■□□ 2.14
Prpf38bQ80SY5 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Prpf38bQ80SY5 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC28.41■■■□□ 2.14
Prpf38bQ80SY5 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
Prpf38bQ80SY5 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
Prpf38bQ80SY5 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Prpf38bQ80SY5 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC28.38■■■□□ 2.13
Prpf38bQ80SY5 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC28.38■■■□□ 2.13
Prpf38bQ80SY5 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC28.37■■■□□ 2.13
Prpf38bQ80SY5 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Prpf38bQ80SY5 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Prpf38bQ80SY5 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC28.35■■■□□ 2.13
Prpf38bQ80SY5 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC28.33■■■□□ 2.13
Prpf38bQ80SY5 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC28.29■■■□□ 2.12
Prpf38bQ80SY5 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
Prpf38bQ80SY5 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
Prpf38bQ80SY5 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Prpf38bQ80SY5 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC28.22■■■□□ 2.11
Prpf38bQ80SY5 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC28.19■■■□□ 2.1
Prpf38bQ80SY5 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
Prpf38bQ80SY5 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC28.13■■■□□ 2.09
Prpf38bQ80SY5 CT025624.2-201ENSMUST00000223609 1909 ntBASIC28.12■■■□□ 2.09
Prpf38bQ80SY5 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC28.12■■■□□ 2.09
Prpf38bQ80SY5 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
Prpf38bQ80SY5 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Prpf38bQ80SY5 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
Prpf38bQ80SY5 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC28.06■■■□□ 2.08
Prpf38bQ80SY5 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Prpf38bQ80SY5 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC28.02■■■□□ 2.08
Prpf38bQ80SY5 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC28■■■□□ 2.07
Prpf38bQ80SY5 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC27.96■■■□□ 2.07
Prpf38bQ80SY5 Tdp2-203ENSMUST00000223804 1136 ntBASIC27.94■■■□□ 2.06
Prpf38bQ80SY5 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC27.94■■■□□ 2.06
Prpf38bQ80SY5 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
Prpf38bQ80SY5 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
Prpf38bQ80SY5 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC27.9■■■□□ 2.06
Prpf38bQ80SY5 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC27.9■■■□□ 2.06
Prpf38bQ80SY5 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC27.82■■■□□ 2.04
Prpf38bQ80SY5 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
Prpf38bQ80SY5 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
Prpf38bQ80SY5 AC166822.3-201ENSMUST00000227394 661 ntBASIC27.76■■■□□ 2.03
Prpf38bQ80SY5 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
Prpf38bQ80SY5 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
Prpf38bQ80SY5 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
Prpf38bQ80SY5 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC27.72■■■□□ 2.03
Prpf38bQ80SY5 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC27.72■■■□□ 2.03
Prpf38bQ80SY5 Gm16148-201ENSMUST00000119653 893 ntBASIC27.7■■■□□ 2.02
Prpf38bQ80SY5 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
Prpf38bQ80SY5 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC27.68■■■□□ 2.02
Prpf38bQ80SY5 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC27.67■■■□□ 2.02
Prpf38bQ80SY5 Gm5987-201ENSMUST00000196433 1151 ntBASIC27.67■■■□□ 2.02
Prpf38bQ80SY5 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
Prpf38bQ80SY5 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
Prpf38bQ80SY5 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
Prpf38bQ80SY5 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC27.61■■■□□ 2.01
Prpf38bQ80SY5 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC27.6■■■□□ 2.01
Prpf38bQ80SY5 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
Prpf38bQ80SY5 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Prpf38bQ80SY5 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC27.54■■■□□ 2
Prpf38bQ80SY5 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC27.54■■■□□ 2
Prpf38bQ80SY5 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC27.52■■■□□ 2
Prpf38bQ80SY5 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Prpf38bQ80SY5 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC27.5■■□□□ 1.99
Prpf38bQ80SY5 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
Prpf38bQ80SY5 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
Prpf38bQ80SY5 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC27.48■■□□□ 1.99
Prpf38bQ80SY5 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC27.48■■□□□ 1.99
Prpf38bQ80SY5 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC27.48■■□□□ 1.99
Prpf38bQ80SY5 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC27.46■■□□□ 1.99
Prpf38bQ80SY5 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Prpf38bQ80SY5 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
Prpf38bQ80SY5 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
Prpf38bQ80SY5 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
Prpf38bQ80SY5 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC27.4■■□□□ 1.98
Prpf38bQ80SY5 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC27.39■■□□□ 1.98
Retrieved 100 of 76,532 protein–RNA pairs in 13.7 ms