Protein–RNA interactions for Protein: Q6P5D8

Smchd1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, mousemouse

Known RBP Predictions only

Length 2,007 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smchd1Q6P5D8 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC31.42■■■□□ 2.62
Smchd1Q6P5D8 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
Smchd1Q6P5D8 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
Smchd1Q6P5D8 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC31.32■■■□□ 2.6
Smchd1Q6P5D8 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Smchd1Q6P5D8 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC31.27■■■□□ 2.6
Smchd1Q6P5D8 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
Smchd1Q6P5D8 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
Smchd1Q6P5D8 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Smchd1Q6P5D8 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC31.19■■■□□ 2.58
Smchd1Q6P5D8 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC31.17■■■□□ 2.58
Smchd1Q6P5D8 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Smchd1Q6P5D8 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Smchd1Q6P5D8 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
Smchd1Q6P5D8 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC31.14■■■□□ 2.57
Smchd1Q6P5D8 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
Smchd1Q6P5D8 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
Smchd1Q6P5D8 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC31.11■■■□□ 2.57
Smchd1Q6P5D8 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Smchd1Q6P5D8 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
Smchd1Q6P5D8 Gm17082-201ENSMUST00000166043 1091 ntBASIC31.07■■■□□ 2.56
Smchd1Q6P5D8 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC31.04■■■□□ 2.56
Smchd1Q6P5D8 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
Smchd1Q6P5D8 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC31.01■■■□□ 2.56
Smchd1Q6P5D8 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC30.99■■■□□ 2.55
Smchd1Q6P5D8 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
Smchd1Q6P5D8 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC30.93■■■□□ 2.54
Smchd1Q6P5D8 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
Smchd1Q6P5D8 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
Smchd1Q6P5D8 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
Smchd1Q6P5D8 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC30.81■■■□□ 2.52
Smchd1Q6P5D8 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
Smchd1Q6P5D8 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC30.79■■■□□ 2.52
Smchd1Q6P5D8 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC30.74■■■□□ 2.51
Smchd1Q6P5D8 Zfp131-207ENSMUST00000224946 1783 ntBASIC30.68■■■□□ 2.5
Smchd1Q6P5D8 Gm27322-201ENSMUST00000184007 104 ntBASIC30.66■■■□□ 2.5
Smchd1Q6P5D8 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Smchd1Q6P5D8 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC30.65■■■□□ 2.5
Smchd1Q6P5D8 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Smchd1Q6P5D8 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC30.63■■■□□ 2.49
Smchd1Q6P5D8 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC30.61■■■□□ 2.49
Smchd1Q6P5D8 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
Smchd1Q6P5D8 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Smchd1Q6P5D8 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
Smchd1Q6P5D8 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
Smchd1Q6P5D8 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
Smchd1Q6P5D8 AL845457.1-201ENSMUST00000197244 68 ntBASIC30.47■■■□□ 2.47
Smchd1Q6P5D8 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC30.47■■■□□ 2.47
Smchd1Q6P5D8 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
Smchd1Q6P5D8 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Smchd1Q6P5D8 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Smchd1Q6P5D8 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Smchd1Q6P5D8 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC30.45■■■□□ 2.46
Smchd1Q6P5D8 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC30.42■■■□□ 2.46
Smchd1Q6P5D8 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC30.42■■■□□ 2.46
Smchd1Q6P5D8 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
Smchd1Q6P5D8 Gm24804-201ENSMUST00000174982 85 ntBASIC30.34■■■□□ 2.45
Smchd1Q6P5D8 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Smchd1Q6P5D8 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Smchd1Q6P5D8 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
Smchd1Q6P5D8 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
Smchd1Q6P5D8 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
Smchd1Q6P5D8 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC30.25■■■□□ 2.43
Smchd1Q6P5D8 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC30.22■■■□□ 2.43
Smchd1Q6P5D8 AC166822.3-201ENSMUST00000227394 661 ntBASIC30.22■■■□□ 2.43
Smchd1Q6P5D8 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC30.08■■■□□ 2.41
Smchd1Q6P5D8 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
Smchd1Q6P5D8 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC30.04■■■□□ 2.4
Smchd1Q6P5D8 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
Smchd1Q6P5D8 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
Smchd1Q6P5D8 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC29.98■■■□□ 2.39
Smchd1Q6P5D8 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
Smchd1Q6P5D8 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
Smchd1Q6P5D8 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
Smchd1Q6P5D8 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
Smchd1Q6P5D8 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC29.95■■■□□ 2.38
Smchd1Q6P5D8 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
Smchd1Q6P5D8 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
Smchd1Q6P5D8 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
Smchd1Q6P5D8 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC29.91■■■□□ 2.38
Smchd1Q6P5D8 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC29.89■■■□□ 2.37
Smchd1Q6P5D8 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC29.88■■■□□ 2.37
Smchd1Q6P5D8 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
Smchd1Q6P5D8 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
Smchd1Q6P5D8 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
Smchd1Q6P5D8 Mipep-204ENSMUST00000225043 1548 ntBASIC29.83■■■□□ 2.37
Smchd1Q6P5D8 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
Smchd1Q6P5D8 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
Smchd1Q6P5D8 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC29.8■■■□□ 2.36
Smchd1Q6P5D8 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC29.77■■■□□ 2.36
Smchd1Q6P5D8 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
Smchd1Q6P5D8 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
Smchd1Q6P5D8 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC29.71■■■□□ 2.35
Smchd1Q6P5D8 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC29.71■■■□□ 2.35
Smchd1Q6P5D8 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
Smchd1Q6P5D8 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
Smchd1Q6P5D8 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC29.66■■■□□ 2.34
Smchd1Q6P5D8 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
Smchd1Q6P5D8 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
Smchd1Q6P5D8 Peli2-204ENSMUST00000226513 1320 ntBASIC29.64■■■□□ 2.34
Retrieved 100 of 76,532 protein–RNA pairs in 16.7 ms