Protein–RNA interactions for Protein: Q6P5D8

Smchd1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, mousemouse

Known RBP Predictions only

Length 2,007 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smchd1Q6P5D8 Gm25239-201ENSMUST00000174915 86 ntBASIC42.92■■■■■ 4.46
Smchd1Q6P5D8 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC39.78■■■■□ 3.96
Smchd1Q6P5D8 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC38.92■■■■□ 3.82
Smchd1Q6P5D8 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC37.53■■■■□ 3.6
Smchd1Q6P5D8 Gm15042-201ENSMUST00000120212 883 ntBASIC37.46■■■■□ 3.59
Smchd1Q6P5D8 Gm24109-201ENSMUST00000175489 103 ntBASIC37.34■■■■□ 3.57
Smchd1Q6P5D8 Gm15045-201ENSMUST00000117359 883 ntBASIC36.97■■■■□ 3.51
Smchd1Q6P5D8 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC36.61■■■■□ 3.45
Smchd1Q6P5D8 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC36.31■■■■□ 3.4
Smchd1Q6P5D8 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC36.3■■■■□ 3.4
Smchd1Q6P5D8 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC36.18■■■■□ 3.38
Smchd1Q6P5D8 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC35.84■■■■□ 3.33
Smchd1Q6P5D8 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC35.76■■■■□ 3.32
Smchd1Q6P5D8 Gm23366-201ENSMUST00000175022 89 ntBASIC35.67■■■■□ 3.3
Smchd1Q6P5D8 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC35.37■■■■□ 3.25
Smchd1Q6P5D8 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC35.1■■■■□ 3.21
Smchd1Q6P5D8 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
Smchd1Q6P5D8 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC34.76■■■■□ 3.16
Smchd1Q6P5D8 AC153911.1-202ENSMUST00000218534 1034 ntBASIC34.75■■■■□ 3.15
Smchd1Q6P5D8 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC34.72■■■■□ 3.15
Smchd1Q6P5D8 Psd-208ENSMUST00000224556 2034 ntBASIC34.62■■■■□ 3.13
Smchd1Q6P5D8 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC34.6■■■■□ 3.13
Smchd1Q6P5D8 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC34.56■■■■□ 3.12
Smchd1Q6P5D8 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
Smchd1Q6P5D8 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC34.48■■■■□ 3.11
Smchd1Q6P5D8 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC34.47■■■■□ 3.11
Smchd1Q6P5D8 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC34.45■■■■□ 3.11
Smchd1Q6P5D8 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC34.4■■■■□ 3.1
Smchd1Q6P5D8 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC34.3■■■■□ 3.08
Smchd1Q6P5D8 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC34.27■■■■□ 3.08
Smchd1Q6P5D8 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
Smchd1Q6P5D8 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC34.11■■■■□ 3.05
Smchd1Q6P5D8 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC33.97■■■■□ 3.03
Smchd1Q6P5D8 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC33.94■■■■□ 3.02
Smchd1Q6P5D8 Gm25238-201ENSMUST00000174914 89 ntBASIC33.91■■■■□ 3.02
Smchd1Q6P5D8 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC33.73■■■□□ 2.99
Smchd1Q6P5D8 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC33.72■■■□□ 2.99
Smchd1Q6P5D8 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC33.63■■■□□ 2.97
Smchd1Q6P5D8 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
Smchd1Q6P5D8 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC33.42■■■□□ 2.94
Smchd1Q6P5D8 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC33.41■■■□□ 2.94
Smchd1Q6P5D8 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC33.39■■■□□ 2.94
Smchd1Q6P5D8 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC33.22■■■□□ 2.91
Smchd1Q6P5D8 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
Smchd1Q6P5D8 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC33.08■■■□□ 2.89
Smchd1Q6P5D8 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC32.99■■■□□ 2.87
Smchd1Q6P5D8 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC32.98■■■□□ 2.87
Smchd1Q6P5D8 Gm27325-201ENSMUST00000175467 74 ntBASIC32.97■■■□□ 2.87
Smchd1Q6P5D8 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
Smchd1Q6P5D8 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
Smchd1Q6P5D8 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC32.9■■■□□ 2.86
Smchd1Q6P5D8 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
Smchd1Q6P5D8 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
Smchd1Q6P5D8 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32.72■■■□□ 2.83
Smchd1Q6P5D8 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
Smchd1Q6P5D8 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
Smchd1Q6P5D8 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC32.58■■■□□ 2.81
Smchd1Q6P5D8 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC32.58■■■□□ 2.81
Smchd1Q6P5D8 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC32.58■■■□□ 2.81
Smchd1Q6P5D8 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
Smchd1Q6P5D8 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC32.44■■■□□ 2.78
Smchd1Q6P5D8 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
Smchd1Q6P5D8 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
Smchd1Q6P5D8 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
Smchd1Q6P5D8 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
Smchd1Q6P5D8 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC32.33■■■□□ 2.77
Smchd1Q6P5D8 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC32.27■■■□□ 2.76
Smchd1Q6P5D8 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC32.26■■■□□ 2.75
Smchd1Q6P5D8 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
Smchd1Q6P5D8 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
Smchd1Q6P5D8 Gm25262-201ENSMUST00000174934 133 ntBASIC32.16■■■□□ 2.74
Smchd1Q6P5D8 Rab21-202ENSMUST00000218831 843 ntBASIC32.14■■■□□ 2.74
Smchd1Q6P5D8 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
Smchd1Q6P5D8 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
Smchd1Q6P5D8 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC32.05■■■□□ 2.72
Smchd1Q6P5D8 Gm42596-201ENSMUST00000196305 1958 ntBASIC32.04■■■□□ 2.72
Smchd1Q6P5D8 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC32.02■■■□□ 2.72
Smchd1Q6P5D8 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC32.01■■■□□ 2.71
Smchd1Q6P5D8 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC31.99■■■□□ 2.71
Smchd1Q6P5D8 Gm10524-201ENSMUST00000181931 1893 ntBASIC31.97■■■□□ 2.71
Smchd1Q6P5D8 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
Smchd1Q6P5D8 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC31.93■■■□□ 2.7
Smchd1Q6P5D8 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
Smchd1Q6P5D8 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
Smchd1Q6P5D8 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC31.83■■■□□ 2.69
Smchd1Q6P5D8 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.69
Smchd1Q6P5D8 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
Smchd1Q6P5D8 CT025624.2-201ENSMUST00000223609 1909 ntBASIC31.77■■■□□ 2.68
Smchd1Q6P5D8 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC31.73■■■□□ 2.67
Smchd1Q6P5D8 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC31.71■■■□□ 2.67
Smchd1Q6P5D8 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC31.7■■■□□ 2.66
Smchd1Q6P5D8 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC31.63■■■□□ 2.65
Smchd1Q6P5D8 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
Smchd1Q6P5D8 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
Smchd1Q6P5D8 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC31.56■■■□□ 2.64
Smchd1Q6P5D8 Gm8109-201ENSMUST00000194076 746 ntBASIC31.53■■■□□ 2.64
Smchd1Q6P5D8 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC31.47■■■□□ 2.63
Smchd1Q6P5D8 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Smchd1Q6P5D8 Gm26115-201ENSMUST00000175605 87 ntBASIC31.45■■■□□ 2.63
Smchd1Q6P5D8 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC31.44■■■□□ 2.62
Retrieved 100 of 76,532 protein–RNA pairs in 46.8 ms