Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
Col7a1Q63870 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC24.76■■□□□ 1.55
Col7a1Q63870 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC24.75■■□□□ 1.55
Col7a1Q63870 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Col7a1Q63870 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Col7a1Q63870 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Col7a1Q63870 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC24.65■■□□□ 1.54
Col7a1Q63870 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC24.62■■□□□ 1.53
Col7a1Q63870 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC24.62■■□□□ 1.53
Col7a1Q63870 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Col7a1Q63870 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
Col7a1Q63870 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
Col7a1Q63870 Gm5987-201ENSMUST00000196433 1151 ntBASIC24.55■■□□□ 1.52
Col7a1Q63870 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Col7a1Q63870 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC24.54■■□□□ 1.52
Col7a1Q63870 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC24.52■■□□□ 1.52
Col7a1Q63870 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
Col7a1Q63870 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
Col7a1Q63870 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
Col7a1Q63870 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
Col7a1Q63870 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC24.41■■□□□ 1.5
Col7a1Q63870 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC24.37■■□□□ 1.49
Col7a1Q63870 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
Col7a1Q63870 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
Col7a1Q63870 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC24.33■■□□□ 1.48
Col7a1Q63870 Tdp2-203ENSMUST00000223804 1136 ntBASIC24.33■■□□□ 1.48
Col7a1Q63870 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC24.28■■□□□ 1.48
Col7a1Q63870 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC24.27■■□□□ 1.48
Col7a1Q63870 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
Col7a1Q63870 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Col7a1Q63870 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC24.25■■□□□ 1.47
Col7a1Q63870 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Col7a1Q63870 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
Col7a1Q63870 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Col7a1Q63870 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC24.2■■□□□ 1.46
Col7a1Q63870 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
Col7a1Q63870 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
Col7a1Q63870 Gm16148-201ENSMUST00000119653 893 ntBASIC24.14■■□□□ 1.45
Col7a1Q63870 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC24.12■■□□□ 1.45
Col7a1Q63870 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC24.12■■□□□ 1.45
Col7a1Q63870 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC24.11■■□□□ 1.45
Col7a1Q63870 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC24.11■■□□□ 1.45
Col7a1Q63870 AC166822.3-201ENSMUST00000227394 661 ntBASIC24.07■■□□□ 1.44
Col7a1Q63870 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Col7a1Q63870 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
Col7a1Q63870 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC24.05■■□□□ 1.44
Col7a1Q63870 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC24.04■■□□□ 1.44
Col7a1Q63870 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC24.01■■□□□ 1.43
Col7a1Q63870 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC24■■□□□ 1.43
Col7a1Q63870 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Col7a1Q63870 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
Col7a1Q63870 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
Col7a1Q63870 Gm45855-201ENSMUST00000212546 880 ntBASIC23.97■■□□□ 1.43
Col7a1Q63870 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Col7a1Q63870 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC23.93■■□□□ 1.42
Col7a1Q63870 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
Col7a1Q63870 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Col7a1Q63870 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Col7a1Q63870 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
Col7a1Q63870 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC23.91■■□□□ 1.42
Col7a1Q63870 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
Col7a1Q63870 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
Col7a1Q63870 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC23.87■■□□□ 1.41
Col7a1Q63870 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC23.87■■□□□ 1.41
Col7a1Q63870 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC23.87■■□□□ 1.41
Col7a1Q63870 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Col7a1Q63870 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC23.85■■□□□ 1.41
Col7a1Q63870 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Col7a1Q63870 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Col7a1Q63870 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Col7a1Q63870 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC23.8■■□□□ 1.4
Col7a1Q63870 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
Col7a1Q63870 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC23.79■■□□□ 1.4
Col7a1Q63870 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Col7a1Q63870 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
Col7a1Q63870 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
Col7a1Q63870 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
Col7a1Q63870 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC23.74■■□□□ 1.39
Col7a1Q63870 Psd-208ENSMUST00000224556 2034 ntBASIC23.72■■□□□ 1.39
Col7a1Q63870 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Col7a1Q63870 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Col7a1Q63870 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Col7a1Q63870 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC23.68■■□□□ 1.38
Col7a1Q63870 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Col7a1Q63870 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC23.66■■□□□ 1.38
Col7a1Q63870 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
Col7a1Q63870 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Col7a1Q63870 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
Col7a1Q63870 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
Col7a1Q63870 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Col7a1Q63870 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Col7a1Q63870 Gm9397-201ENSMUST00000200125 605 ntBASIC23.58■■□□□ 1.37
Col7a1Q63870 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Col7a1Q63870 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Col7a1Q63870 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC23.55■■□□□ 1.36
Col7a1Q63870 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Col7a1Q63870 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
Col7a1Q63870 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Col7a1Q63870 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Col7a1Q63870 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Retrieved 100 of 76,532 protein–RNA pairs in 14.1 ms