Protein–RNA interactions for Protein: P54860

UFD2, E4 ubiquitin-protein ligase UFD2, yeastyeast

Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UFD2P54860 YHR165W-AYHR165W-A 312 nt14.35□□□□□ -0.11
UFD2P54860 YLR154C-GYLR154C-G 150 nt14.29□□□□□ -0.12
UFD2P54860 MEP2YNL142W 1500 nt14.27□□□□□ -0.12
UFD2P54860 SIS1YNL007C 1059 nt14.26□□□□□ -0.13
UFD2P54860 RPP2AYOL039W 321 nt14.18□□□□□ -0.14
UFD2P54860 PTP1YDL230W 1008 nt14.14□□□□□ -0.15
UFD2P54860 YJL152WYJL152W 360 nt14.12□□□□□ -0.15
UFD2P54860 DSK2YMR276W 1122 nt14.12□□□□□ -0.15
UFD2P54860 TIR4YOR009W 1464 nt14.11□□□□□ -0.15
UFD2P54860 YLR236CYLR236C 324 nt14.1□□□□□ -0.15
UFD2P54860 YPR011CYPR011C 981 nt14.09□□□□□ -0.15
UFD2P54860 DCW1YKL046C 1350 nt14.08□□□□□ -0.16
UFD2P54860 YCH1YGR203W 447 nt14.07□□□□□ -0.16
UFD2P54860 IMP2'YIL154C 1041 nt14.06□□□□□ -0.16
UFD2P54860 ART5YGR068C 1761 nt14.04□□□□□ -0.16
UFD2P54860 FMP45YDL222C 930 nt14□□□□□ -0.17
UFD2P54860 CAC2YML102W 1407 nt13.98□□□□□ -0.17
UFD2P54860 GFD2YCL036W 1701 nt13.98□□□□□ -0.17
UFD2P54860 PET9YBL030C 957 nt13.96□□□□□ -0.17
UFD2P54860 IDH1YNL037C 1083 nt13.93□□□□□ -0.18
UFD2P54860 YMR057CYMR057C 372 nt13.9□□□□□ -0.18
UFD2P54860 EMI2YDR516C 1503 nt13.9□□□□□ -0.19
UFD2P54860 LPX1YOR084W 1164 nt13.84□□□□□ -0.19
UFD2P54860 YDL221WYDL221W 552 nt13.81□□□□□ -0.2
UFD2P54860 ERV46YAL042W 1248 nt13.81□□□□□ -0.2
UFD2P54860 SSA4YER103W 1929 nt13.81□□□□□ -0.2
UFD2P54860 RTS2YOR077W 699 nt13.8□□□□□ -0.2
UFD2P54860 YCL048W-AYCL048W-A 240 nt13.8□□□□□ -0.2
UFD2P54860 GBP2YCL011C 1284 nt13.79□□□□□ -0.2
UFD2P54860 IRC15YPL017C 1500 nt13.79□□□□□ -0.2
UFD2P54860 YDR433WYDR433W 441 nt13.77□□□□□ -0.21
UFD2P54860 YMR090WYMR090W 684 nt13.74□□□□□ -0.21
UFD2P54860 FPS1YLL043W 2010 nt13.73□□□□□ -0.21
UFD2P54860 MXR2YCL033C 507 nt13.69□□□□□ -0.22
UFD2P54860 YKR040CYKR040C 504 nt13.67□□□□□ -0.22
UFD2P54860 GIS3YLR094C 1509 nt13.67□□□□□ -0.22
UFD2P54860 CUE1YMR264W 612 nt13.65□□□□□ -0.22
UFD2P54860 SPP1YPL138C 1062 nt13.62□□□□□ -0.23
UFD2P54860 TCD2YKL027W 1344 nt13.62□□□□□ -0.23
UFD2P54860 SDH1YKL148C 1923 nt13.6□□□□□ -0.23
UFD2P54860 RRD1YIL153W 1182 nt13.58□□□□□ -0.24
UFD2P54860 YBR220CYBR220C 1683 nt13.58□□□□□ -0.24
UFD2P54860 DED1YOR204W 1815 nt13.57□□□□□ -0.24
UFD2P54860 SCC4YER147C 1875 nt13.55□□□□□ -0.24
UFD2P54860 YIL100WYIL100W 354 nt13.47□□□□□ -0.25
UFD2P54860 MRPL8YJL063C 717 nt13.44□□□□□ -0.26
UFD2P54860 FRD1YEL047C 1413 nt13.44□□□□□ -0.26
UFD2P54860 FMT1YBL013W 1206 nt13.43□□□□□ -0.26
UFD2P54860 RTG1YOL067C 534 nt13.39□□□□□ -0.27
UFD2P54860 SOR2YDL246C 1074 nt13.37□□□□□ -0.27
UFD2P54860 SOR1YJR159W 1074 nt13.37□□□□□ -0.27
UFD2P54860 YEL076C-AYEL076C-A 651 nt13.35□□□□□ -0.27
UFD2P54860 YEL076CYEL076C 651 nt13.35□□□□□ -0.27
UFD2P54860 FMP52YER004W 696 nt13.35□□□□□ -0.27
UFD2P54860 YLR464WYLR464W 651 nt13.35□□□□□ -0.27
UFD2P54860 YCL042WYCL042W 360 nt13.34□□□□□ -0.27
UFD2P54860 ADO1YJR105W 1023 nt13.28□□□□□ -0.28
UFD2P54860 CWP1YKL096W 720 nt13.26□□□□□ -0.29
UFD2P54860 BDF1YLR399C 2061 nt13.25□□□□□ -0.29
UFD2P54860 ADH2YMR303C 1047 nt13.24□□□□□ -0.29
UFD2P54860 PTH1YHR189W 573 nt13.23□□□□□ -0.29
UFD2P54860 YNL195CYNL195C 786 nt13.22□□□□□ -0.29
UFD2P54860 RRT12YCR045C 1476 nt13.2□□□□□ -0.3
UFD2P54860 YSC84YHR016C 1407 nt13.2□□□□□ -0.3
UFD2P54860 PCM1YEL058W 1674 nt13.18□□□□□ -0.3
UFD2P54860 YLR235CYLR235C 399 nt13.16□□□□□ -0.3
UFD2P54860 YHL050CYHL050C 2094 nt13.15□□□□□ -0.3
UFD2P54860 SNF6YHL025W 999 nt13.13□□□□□ -0.31
UFD2P54860 HUA1YGR268C 597 nt13.12□□□□□ -0.31
UFD2P54860 YKL030WYKL030W 606 nt13.11□□□□□ -0.31
UFD2P54860 TAT1YBR069C 1860 nt13.1□□□□□ -0.31
UFD2P54860 LCB1YMR296C 1677 nt13.07□□□□□ -0.32
UFD2P54860 DIC1YLR348C 897 nt13.06□□□□□ -0.32
UFD2P54860 SEC11YIR022W 504 nt13.04□□□□□ -0.32
UFD2P54860 YIH1YCR059C 777 nt13.02□□□□□ -0.33
UFD2P54860 RNQ1YCL028W 1218 nt13□□□□□ -0.33
UFD2P54860 TIM23YNR017W 669 nt12.98□□□□□ -0.33
UFD2P54860 UBX6YJL048C 1191 nt12.95□□□□□ -0.34
UFD2P54860 BIO4YNR057C 714 nt12.95□□□□□ -0.34
UFD2P54860 PCH2YBR186W 1695 nt12.94□□□□□ -0.34
UFD2P54860 SIM1YIL123W 1431 nt12.93□□□□□ -0.34
UFD2P54860 YLR179CYLR179C 606 nt12.91□□□□□ -0.34
UFD2P54860 YLL053CYLL053C 459 nt12.89□□□□□ -0.35
UFD2P54860 GUT2YIL155C 1950 nt12.87□□□□□ -0.35
UFD2P54860 YDR094WYDR094W 336 nt12.85□□□□□ -0.35
UFD2P54860 WSC2YNL283C 1512 nt12.82□□□□□ -0.36
UFD2P54860 FTR1YER145C 1215 nt12.81□□□□□ -0.36
UFD2P54860 tL(GAG)GtL(GAG)G 82 nt12.8□□□□□ -0.36
UFD2P54860 YPR064WYPR064W 420 nt12.8□□□□□ -0.36
UFD2P54860 NCP1YHR042W 2076 nt12.79□□□□□ -0.36
UFD2P54860 AHT1YHR093W 549 nt12.78□□□□□ -0.36
UFD2P54860 GAL1YBR020W 1587 nt12.77□□□□□ -0.36
UFD2P54860 AQY1YPR192W 918 nt12.75□□□□□ -0.37
UFD2P54860 TAD3YLR316C 969 nt12.74□□□□□ -0.37
UFD2P54860 TRM5YHR070W 1500 nt12.73□□□□□ -0.37
UFD2P54860 PAC11YDR488C 1602 nt12.73□□□□□ -0.37
UFD2P54860 PIB2YGL023C 1908 nt12.72□□□□□ -0.37
UFD2P54860 ERF2YLR246W 1080 nt12.71□□□□□ -0.37
UFD2P54860 ATF2YGR177C 1608 nt12.7□□□□□ -0.38
UFD2P54860 BOP3YNL042W 1191 nt12.7□□□□□ -0.38
Retrieved 100 of 7,029 protein–RNA pairs in 15.2 ms