Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Sox3P53784 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Sox3P53784 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Sox3P53784 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
Sox3P53784 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC26.16■■□□□ 1.78
Sox3P53784 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC26.14■■□□□ 1.78
Sox3P53784 Gm27322-201ENSMUST00000184007 104 ntBASIC26.12■■□□□ 1.77
Sox3P53784 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Sox3P53784 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Sox3P53784 Zfp131-205ENSMUST00000223812 663 ntBASIC26.08■■□□□ 1.77
Sox3P53784 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC26.06■■□□□ 1.76
Sox3P53784 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Sox3P53784 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC26.05■■□□□ 1.76
Sox3P53784 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Sox3P53784 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
Sox3P53784 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Sox3P53784 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC26■■□□□ 1.75
Sox3P53784 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC25.99■■□□□ 1.75
Sox3P53784 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Sox3P53784 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
Sox3P53784 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Sox3P53784 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC25.96■■□□□ 1.75
Sox3P53784 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC25.96■■□□□ 1.75
Sox3P53784 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Sox3P53784 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC25.95■■□□□ 1.74
Sox3P53784 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC25.93■■□□□ 1.74
Sox3P53784 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC25.9■■□□□ 1.74
Sox3P53784 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC25.9■■□□□ 1.74
Sox3P53784 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
Sox3P53784 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC25.86■■□□□ 1.73
Sox3P53784 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Sox3P53784 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Sox3P53784 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC25.83■■□□□ 1.73
Sox3P53784 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC25.82■■□□□ 1.72
Sox3P53784 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Sox3P53784 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
Sox3P53784 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC25.73■■□□□ 1.71
Sox3P53784 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC25.72■■□□□ 1.71
Sox3P53784 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
Sox3P53784 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
Sox3P53784 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC25.68■■□□□ 1.7
Sox3P53784 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Sox3P53784 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Sox3P53784 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Sox3P53784 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC25.63■■□□□ 1.69
Sox3P53784 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
Sox3P53784 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Sox3P53784 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
Sox3P53784 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Sox3P53784 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
Sox3P53784 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Sox3P53784 CT025624.2-201ENSMUST00000223609 1909 ntBASIC25.51■■□□□ 1.67
Sox3P53784 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Sox3P53784 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC25.47■■□□□ 1.67
Sox3P53784 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Sox3P53784 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Sox3P53784 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
Sox3P53784 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC25.44■■□□□ 1.66
Sox3P53784 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC25.44■■□□□ 1.66
Sox3P53784 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Sox3P53784 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC25.43■■□□□ 1.66
Sox3P53784 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC25.35■■□□□ 1.65
Sox3P53784 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Sox3P53784 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC25.34■■□□□ 1.65
Sox3P53784 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
Sox3P53784 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Sox3P53784 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
Sox3P53784 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
Sox3P53784 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC25.28■■□□□ 1.64
Sox3P53784 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC25.26■■□□□ 1.63
Sox3P53784 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC25.26■■□□□ 1.63
Sox3P53784 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC25.25■■□□□ 1.63
Sox3P53784 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
Sox3P53784 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC25.22■■□□□ 1.63
Sox3P53784 AC166822.3-201ENSMUST00000227394 661 ntBASIC25.21■■□□□ 1.63
Sox3P53784 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
Sox3P53784 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Sox3P53784 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Sox3P53784 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC25.16■■□□□ 1.62
Sox3P53784 Tdp2-203ENSMUST00000223804 1136 ntBASIC25.15■■□□□ 1.62
Sox3P53784 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Sox3P53784 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC25.13■■□□□ 1.61
Sox3P53784 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC25.13■■□□□ 1.61
Sox3P53784 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC25.12■■□□□ 1.61
Sox3P53784 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Sox3P53784 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
Sox3P53784 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
Sox3P53784 Gm16148-201ENSMUST00000119653 893 ntBASIC25.04■■□□□ 1.6
Sox3P53784 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC25.03■■□□□ 1.6
Sox3P53784 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Sox3P53784 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC25■■□□□ 1.59
Sox3P53784 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Sox3P53784 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC24.98■■□□□ 1.59
Sox3P53784 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC24.98■■□□□ 1.59
Sox3P53784 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
Sox3P53784 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC24.97■■□□□ 1.59
Sox3P53784 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Sox3P53784 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC24.96■■□□□ 1.59
Sox3P53784 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
Sox3P53784 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms