Protein–RNA interactions for Protein: P40968

CDC40, Pre-mRNA-processing factor 17, yeastyeast

Predicted RBP Predictions only

Length 455 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CDC40P40968 ALF1YNL148C 765 nt9.6□□□□□ -0.87
CDC40P40968 FUN26YAL022C 1554 nt9.59□□□□□ -0.87
CDC40P40968 RPM1RPM1 483 nt9.59□□□□□ -0.87
CDC40P40968 BOP3YNL042W 1191 nt9.59□□□□□ -0.87
CDC40P40968 BOR1YNL275W 1731 nt9.59□□□□□ -0.87
CDC40P40968 RDN37-1RDN37-1 5354 nt9.58□□□□□ -0.88
CDC40P40968 RDN37-2RDN37-2 5354 nt9.58□□□□□ -0.88
CDC40P40968 RRT12YCR045C 1476 nt9.53□□□□□ -0.88
CDC40P40968 SIS1YNL007C 1059 nt9.49□□□□□ -0.89
CDC40P40968 RTS2YOR077W 699 nt9.48□□□□□ -0.89
CDC40P40968 GFD2YCL036W 1701 nt9.48□□□□□ -0.89
CDC40P40968 BDH2YAL061W 1254 nt9.47□□□□□ -0.89
CDC40P40968 SRB2YHR041C 633 nt9.45□□□□□ -0.9
CDC40P40968 ART5YGR068C 1761 nt9.42□□□□□ -0.9
CDC40P40968 TRM9YML014W 840 nt9.4□□□□□ -0.9
CDC40P40968 CCT6YDR188W 1641 nt9.38□□□□□ -0.91
CDC40P40968 MCH5YOR306C 1566 nt9.37□□□□□ -0.91
CDC40P40968 YNL195CYNL195C 786 nt9.37□□□□□ -0.91
CDC40P40968 YFL054CYFL054C 1941 nt9.37□□□□□ -0.91
CDC40P40968 CUE1YMR264W 612 nt9.36□□□□□ -0.91
CDC40P40968 NCP1YHR042W 2076 nt9.35□□□□□ -0.91
CDC40P40968 YJL225CYJL225C 5277 nt9.35□□□□□ -0.91
CDC40P40968 SPT8YLR055C 1809 nt9.35□□□□□ -0.91
CDC40P40968 SUF2tP(AGG)C 72 nt9.33□□□□□ -0.92
CDC40P40968 SUF10tP(AGG)N 72 nt9.33□□□□□ -0.92
CDC40P40968 YKL097CYKL097C 411 nt9.32□□□□□ -0.92
CDC40P40968 WWM1YFL010C 636 nt9.31□□□□□ -0.92
CDC40P40968 PET9YBL030C 957 nt9.3□□□□□ -0.92
CDC40P40968 FRE6YLL051C 2139 nt9.28□□□□□ -0.92
CDC40P40968 LSM3YLR438C-A 270 nt9.28□□□□□ -0.92
CDC40P40968 HSP60YLR259C 1719 nt9.25□□□□□ -0.93
CDC40P40968 ALG12YNR030W 1656 nt9.24□□□□□ -0.93
CDC40P40968 SHU1YHL006C 453 nt9.24□□□□□ -0.93
CDC40P40968 YIL100WYIL100W 354 nt9.24□□□□□ -0.93
CDC40P40968 YGR021WYGR021W 873 nt9.22□□□□□ -0.93
CDC40P40968 YFL021C-AYFL021C-A 855 nt9.19□□□□□ -0.94
CDC40P40968 YAL037C-BYAL037C-B 975 nt9.17□□□□□ -0.94
CDC40P40968 YCH1YGR203W 447 nt9.15□□□□□ -0.94
CDC40P40968 HOM6YJR139C 1080 nt9.14□□□□□ -0.95
CDC40P40968 SWE1YJL187C 2460 nt9.13□□□□□ -0.95
CDC40P40968 TIR4YOR009W 1464 nt9.12□□□□□ -0.95
CDC40P40968 YMR057CYMR057C 372 nt9.09□□□□□ -0.95
CDC40P40968 LCB1YMR296C 1677 nt9.07□□□□□ -0.96
CDC40P40968 GLK1YCL040W 1503 nt9.07□□□□□ -0.96
CDC40P40968 YLR236CYLR236C 324 nt9.06□□□□□ -0.96
CDC40P40968 MNP1YGL068W 585 nt9.04□□□□□ -0.96
CDC40P40968 RKM5YLR137W 1104 nt9.02□□□□□ -0.97
CDC40P40968 NAR1YNL240C 1476 nt8.99□□□□□ -0.97
CDC40P40968 DSK2YMR276W 1122 nt8.92□□□□□ -0.98
CDC40P40968 FUR4YBR021W 1902 nt8.92□□□□□ -0.98
CDC40P40968 LYS4YDR234W 2082 nt8.89□□□□□ -0.99
CDC40P40968 AAC1YMR056C 930 nt8.87□□□□□ -0.99
CDC40P40968 YOL037CYOL037C 354 nt8.87□□□□□ -0.99
CDC40P40968 YOR139CYOR139C 393 nt8.87□□□□□ -0.99
CDC40P40968 SSN3YPL042C 1668 nt8.87□□□□□ -0.99
CDC40P40968 NPL3YDR432W 1245 nt8.86□□□□□ -0.99
CDC40P40968 PRP4YPR178W 1398 nt8.85□□□□□ -0.99
CDC40P40968 BIO4YNR057C 714 nt8.83□□□□□ -1
CDC40P40968 BSP1YPR171W 1731 nt8.83□□□□□ -1
CDC40P40968 YEL076C-AYEL076C-A 651 nt8.81□□□□□ -1
CDC40P40968 YEL076CYEL076C 651 nt8.81□□□□□ -1
CDC40P40968 YLR464WYLR464W 651 nt8.81□□□□□ -1
CDC40P40968 DPS1YLL018C 1674 nt8.81□□□□□ -1
CDC40P40968 BIO5YNR056C 1686 nt8.79□□□□□ -1
CDC40P40968 YLR154C-GYLR154C-G 150 nt8.79□□□□□ -1
CDC40P40968 PBP1YGR178C 2169 nt8.78□□□□□ -1
CDC40P40968 YJL152WYJL152W 360 nt8.77□□□□□ -1.01
CDC40P40968 YCL048W-AYCL048W-A 240 nt8.77□□□□□ -1.01
CDC40P40968 SIM1YIL123W 1431 nt8.76□□□□□ -1.01
CDC40P40968 CYT2YKL087C 675 nt8.75□□□□□ -1.01
CDC40P40968 CMP2YML057W 1815 nt8.73□□□□□ -1.01
CDC40P40968 SNF1YDR477W 1902 nt8.72□□□□□ -1.01
CDC40P40968 HSL7YBR133C 2484 nt8.71□□□□□ -1.01
CDC40P40968 BMT6YLR063W 1098 nt8.68□□□□□ -1.02
CDC40P40968 CCA1YER168C 1641 nt8.67□□□□□ -1.02
CDC40P40968 WHI5YOR083W 888 nt8.66□□□□□ -1.02
CDC40P40968 YLR281CYLR281C 468 nt8.65□□□□□ -1.02
CDC40P40968 YHR056W-AYHR056W-A 435 nt8.64□□□□□ -1.03
CDC40P40968 YKR005CYKR005C 1578 nt8.64□□□□□ -1.03
CDC40P40968 GID7YCL039W 2238 nt8.63□□□□□ -1.03
CDC40P40968 PCM1YEL058W 1674 nt8.62□□□□□ -1.03
CDC40P40968 FMP52YER004W 696 nt8.58□□□□□ -1.04
CDC40P40968 RRD1YIL153W 1182 nt8.58□□□□□ -1.04
CDC40P40968 tM(CAU)CtM(CAU)C 72 nt8.57□□□□□ -1.04
CDC40P40968 IMT4tM(CAU)E 72 nt8.57□□□□□ -1.04
CDC40P40968 IMT3tM(CAU)J3 72 nt8.57□□□□□ -1.04
CDC40P40968 IMT1tM(CAU)O1 72 nt8.57□□□□□ -1.04
CDC40P40968 IMT2tM(CAU)P 72 nt8.57□□□□□ -1.04
CDC40P40968 IMP2'YIL154C 1041 nt8.56□□□□□ -1.04
CDC40P40968 CRR1YLR213C 1269 nt8.56□□□□□ -1.04
CDC40P40968 IDH1YNL037C 1083 nt8.55□□□□□ -1.04
CDC40P40968 YAT1YAR035W 2064 nt8.55□□□□□ -1.04
CDC40P40968 ERF2YLR246W 1080 nt8.54□□□□□ -1.04
CDC40P40968 ESBP6YNL125C 2022 nt8.54□□□□□ -1.04
CDC40P40968 DED1YOR204W 1815 nt8.53□□□□□ -1.04
CDC40P40968 RAX1YOR301W 1308 nt8.53□□□□□ -1.04
CDC40P40968 RDN25-1RDN25-1 3396 nt8.52□□□□□ -1.05
CDC40P40968 RDN25-2RDN25-2 3396 nt8.52□□□□□ -1.05
CDC40P40968 IRC24YIR036C 792 nt8.52□□□□□ -1.05
CDC40P40968 RFC1YOR217W 2586 nt8.52□□□□□ -1.05
Retrieved 100 of 7,029 protein–RNA pairs in 45.8 ms