Protein–RNA interactions for Protein: P40965

MSH4, MutS protein homolog 4, yeastyeast

Predicted RBP Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH4P40965 FMP45YDL222C 930 nt14.35□□□□□ -0.11
MSH4P40965 YDR095CYDR095C 411 nt14.35□□□□□ -0.11
MSH4P40965 SUF2tP(AGG)C 72 nt14.35□□□□□ -0.11
MSH4P40965 SUF10tP(AGG)N 72 nt14.35□□□□□ -0.11
MSH4P40965 IMP2'YIL154C 1041 nt14.3□□□□□ -0.12
MSH4P40965 PAC11YDR488C 1602 nt14.29□□□□□ -0.12
MSH4P40965 YLR236CYLR236C 324 nt14.27□□□□□ -0.13
MSH4P40965 YPR011CYPR011C 981 nt14.25□□□□□ -0.13
MSH4P40965 YHR165W-AYHR165W-A 312 nt14.24□□□□□ -0.13
MSH4P40965 YJL152WYJL152W 360 nt14.24□□□□□ -0.13
MSH4P40965 YCH1YGR203W 447 nt14.19□□□□□ -0.14
MSH4P40965 MEP2YNL142W 1500 nt14.19□□□□□ -0.14
MSH4P40965 SIS1YNL007C 1059 nt14.14□□□□□ -0.15
MSH4P40965 NVJ2YPR091C 2313 nt14.11□□□□□ -0.15
MSH4P40965 IDH1YNL037C 1083 nt14.08□□□□□ -0.16
MSH4P40965 RPP2AYOL039W 321 nt14.07□□□□□ -0.16
MSH4P40965 BDF1YLR399C 2061 nt14.03□□□□□ -0.16
MSH4P40965 PTP1YDL230W 1008 nt14.03□□□□□ -0.16
MSH4P40965 LPX1YOR084W 1164 nt14.02□□□□□ -0.17
MSH4P40965 DCW1YKL046C 1350 nt14.01□□□□□ -0.17
MSH4P40965 YDR433WYDR433W 441 nt13.98□□□□□ -0.17
MSH4P40965 MRPL8YJL063C 717 nt13.97□□□□□ -0.17
MSH4P40965 TIR4YOR009W 1464 nt13.96□□□□□ -0.17
MSH4P40965 ERV46YAL042W 1248 nt13.95□□□□□ -0.18
MSH4P40965 ART5YGR068C 1761 nt13.91□□□□□ -0.18
MSH4P40965 GBP2YCL011C 1284 nt13.89□□□□□ -0.19
MSH4P40965 CAC2YML102W 1407 nt13.89□□□□□ -0.19
MSH4P40965 SPP1YPL138C 1062 nt13.87□□□□□ -0.19
MSH4P40965 GFD2YCL036W 1701 nt13.85□□□□□ -0.19
MSH4P40965 ADO1YJR105W 1023 nt13.83□□□□□ -0.2
MSH4P40965 YKR040CYKR040C 504 nt13.83□□□□□ -0.2
MSH4P40965 PET9YBL030C 957 nt13.83□□□□□ -0.2
MSH4P40965 TAT1YBR069C 1860 nt13.81□□□□□ -0.2
MSH4P40965 YCL048W-AYCL048W-A 240 nt13.81□□□□□ -0.2
MSH4P40965 EMI2YDR516C 1503 nt13.8□□□□□ -0.2
MSH4P40965 YEL076C-AYEL076C-A 651 nt13.78□□□□□ -0.2
MSH4P40965 YEL076CYEL076C 651 nt13.78□□□□□ -0.2
MSH4P40965 YLR464WYLR464W 651 nt13.78□□□□□ -0.2
MSH4P40965 YMR057CYMR057C 372 nt13.78□□□□□ -0.2
MSH4P40965 MXR2YCL033C 507 nt13.78□□□□□ -0.2
MSH4P40965 YDL221WYDL221W 552 nt13.72□□□□□ -0.21
MSH4P40965 YBR220CYBR220C 1683 nt13.72□□□□□ -0.21
MSH4P40965 TCD2YKL027W 1344 nt13.69□□□□□ -0.22
MSH4P40965 FPS1YLL043W 2010 nt13.68□□□□□ -0.22
MSH4P40965 RTG1YOL067C 534 nt13.68□□□□□ -0.22
MSH4P40965 RTS2YOR077W 699 nt13.68□□□□□ -0.22
MSH4P40965 IRC15YPL017C 1500 nt13.68□□□□□ -0.22
MSH4P40965 YMR090WYMR090W 684 nt13.65□□□□□ -0.22
MSH4P40965 GIS3YLR094C 1509 nt13.56□□□□□ -0.24
MSH4P40965 SDH1YKL148C 1923 nt13.55□□□□□ -0.24
MSH4P40965 HUA1YGR268C 597 nt13.55□□□□□ -0.24
MSH4P40965 UBX6YJL048C 1191 nt13.55□□□□□ -0.24
MSH4P40965 CUE1YMR264W 612 nt13.54□□□□□ -0.24
MSH4P40965 DED1YOR204W 1815 nt13.47□□□□□ -0.25
MSH4P40965 SCC4YER147C 1875 nt13.46□□□□□ -0.26
MSH4P40965 FRD1YEL047C 1413 nt13.46□□□□□ -0.26
MSH4P40965 RRD1YIL153W 1182 nt13.45□□□□□ -0.26
MSH4P40965 YCL042WYCL042W 360 nt13.45□□□□□ -0.26
MSH4P40965 PTH1YHR189W 573 nt13.41□□□□□ -0.26
MSH4P40965 YIL100WYIL100W 354 nt13.35□□□□□ -0.27
MSH4P40965 YLR235CYLR235C 399 nt13.34□□□□□ -0.27
MSH4P40965 YDR094WYDR094W 336 nt13.32□□□□□ -0.28
MSH4P40965 YKL030WYKL030W 606 nt13.32□□□□□ -0.28
MSH4P40965 SOR2YDL246C 1074 nt13.31□□□□□ -0.28
MSH4P40965 SOR1YJR159W 1074 nt13.31□□□□□ -0.28
MSH4P40965 FMT1YBL013W 1206 nt13.31□□□□□ -0.28
MSH4P40965 PCH2YBR186W 1695 nt13.26□□□□□ -0.29
MSH4P40965 FMP52YER004W 696 nt13.24□□□□□ -0.29
MSH4P40965 CWP1YKL096W 720 nt13.24□□□□□ -0.29
MSH4P40965 GUT2YIL155C 1950 nt13.23□□□□□ -0.29
MSH4P40965 LCB1YMR296C 1677 nt13.22□□□□□ -0.29
MSH4P40965 SEC11YIR022W 504 nt13.18□□□□□ -0.3
MSH4P40965 ADH2YMR303C 1047 nt13.15□□□□□ -0.3
MSH4P40965 YSC84YHR016C 1407 nt13.14□□□□□ -0.31
MSH4P40965 PIB2YGL023C 1908 nt13.12□□□□□ -0.31
MSH4P40965 YNL195CYNL195C 786 nt13.12□□□□□ -0.31
MSH4P40965 YHL050CYHL050C 2094 nt13.11□□□□□ -0.31
MSH4P40965 RRT12YCR045C 1476 nt13.1□□□□□ -0.31
MSH4P40965 TIM23YNR017W 669 nt13.08□□□□□ -0.32
MSH4P40965 YFL015W-AYFL015W-A 318 nt13.07□□□□□ -0.32
MSH4P40965 SNF6YHL025W 999 nt13.07□□□□□ -0.32
MSH4P40965 DIC1YLR348C 897 nt13.07□□□□□ -0.32
MSH4P40965 PCM1YEL058W 1674 nt13.05□□□□□ -0.32
MSH4P40965 UME6YDR207C 2511 nt13.03□□□□□ -0.32
MSH4P40965 tL(GAG)GtL(GAG)G 82 nt13.02□□□□□ -0.33
MSH4P40965 YLR179CYLR179C 606 nt13.02□□□□□ -0.33
MSH4P40965 YPR064WYPR064W 420 nt12.96□□□□□ -0.33
MSH4P40965 RRT5YFR032C 870 nt12.92□□□□□ -0.34
MSH4P40965 PAU16YKL224C 372 nt12.92□□□□□ -0.34
MSH4P40965 RNQ1YCL028W 1218 nt12.92□□□□□ -0.34
MSH4P40965 RTF1YGL244W 1677 nt12.9□□□□□ -0.34
MSH4P40965 YFR018CYFR018C 1092 nt12.9□□□□□ -0.34
MSH4P40965 YIH1YCR059C 777 nt12.88□□□□□ -0.35
MSH4P40965 TAD3YLR316C 969 nt12.85□□□□□ -0.35
MSH4P40965 BIO4YNR057C 714 nt12.82□□□□□ -0.36
MSH4P40965 PRE6YOL038W 765 nt12.82□□□□□ -0.36
MSH4P40965 SIM1YIL123W 1431 nt12.81□□□□□ -0.36
MSH4P40965 PTK1YKL198C 1989 nt12.8□□□□□ -0.36
MSH4P40965 WSC2YNL283C 1512 nt12.79□□□□□ -0.36
MSH4P40965 AHT1YHR093W 549 nt12.78□□□□□ -0.36
Retrieved 100 of 7,029 protein–RNA pairs in 15.1 ms