Protein–RNA interactions for Protein: P0C2J4

TY2A-LR1, Transposon Ty2-LR1 Gag polyprotein, yeastyeast

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TY2A-LR1P0C2J4 CAC2YML102W 1407 nt11.69□□□□□ -0.54
TY2A-LR1P0C2J4 YLR154C-GYLR154C-G 150 nt11.69□□□□□ -0.54
TY2A-LR1P0C2J4 YLR281CYLR281C 468 nt11.67□□□□□ -0.54
TY2A-LR1P0C2J4 YMR090WYMR090W 684 nt11.66□□□□□ -0.54
TY2A-LR1P0C2J4 WHI5YOR083W 888 nt11.66□□□□□ -0.54
TY2A-LR1P0C2J4 ART5YGR068C 1761 nt11.66□□□□□ -0.54
TY2A-LR1P0C2J4 TIR4YOR009W 1464 nt11.64□□□□□ -0.55
TY2A-LR1P0C2J4 YJL152WYJL152W 360 nt11.64□□□□□ -0.55
TY2A-LR1P0C2J4 YDL221WYDL221W 552 nt11.62□□□□□ -0.55
TY2A-LR1P0C2J4 GFD2YCL036W 1701 nt11.62□□□□□ -0.55
TY2A-LR1P0C2J4 PET9YBL030C 957 nt11.6□□□□□ -0.55
TY2A-LR1P0C2J4 YCH1YGR203W 447 nt11.59□□□□□ -0.55
TY2A-LR1P0C2J4 PUS2YGL063W 1113 nt11.56□□□□□ -0.56
TY2A-LR1P0C2J4 tM(CAU)CtM(CAU)C 72 nt11.56□□□□□ -0.56
TY2A-LR1P0C2J4 IMT4tM(CAU)E 72 nt11.56□□□□□ -0.56
TY2A-LR1P0C2J4 IMT3tM(CAU)J3 72 nt11.56□□□□□ -0.56
TY2A-LR1P0C2J4 IMT1tM(CAU)O1 72 nt11.56□□□□□ -0.56
TY2A-LR1P0C2J4 IMT2tM(CAU)P 72 nt11.56□□□□□ -0.56
TY2A-LR1P0C2J4 RTS2YOR077W 699 nt11.53□□□□□ -0.56
TY2A-LR1P0C2J4 YMR057CYMR057C 372 nt11.52□□□□□ -0.57
TY2A-LR1P0C2J4 IRC15YPL017C 1500 nt11.51□□□□□ -0.57
TY2A-LR1P0C2J4 SDH1YKL148C 1923 nt11.47□□□□□ -0.57
TY2A-LR1P0C2J4 YBR220CYBR220C 1683 nt11.46□□□□□ -0.57
TY2A-LR1P0C2J4 GIS3YLR094C 1509 nt11.44□□□□□ -0.58
TY2A-LR1P0C2J4 DSK2YMR276W 1122 nt11.43□□□□□ -0.58
TY2A-LR1P0C2J4 YCL048W-AYCL048W-A 240 nt11.43□□□□□ -0.58
TY2A-LR1P0C2J4 IMP2'YIL154C 1041 nt11.42□□□□□ -0.58
TY2A-LR1P0C2J4 SCC4YER147C 1875 nt11.41□□□□□ -0.58
TY2A-LR1P0C2J4 IDH1YNL037C 1083 nt11.41□□□□□ -0.58
TY2A-LR1P0C2J4 CUE1YMR264W 612 nt11.39□□□□□ -0.59
TY2A-LR1P0C2J4 YLR236CYLR236C 324 nt11.37□□□□□ -0.59
TY2A-LR1P0C2J4 FPS1YLL043W 2010 nt11.35□□□□□ -0.59
TY2A-LR1P0C2J4 YPR011CYPR011C 981 nt11.31□□□□□ -0.6
TY2A-LR1P0C2J4 GBP2YCL011C 1284 nt11.31□□□□□ -0.6
TY2A-LR1P0C2J4 BDF1YLR399C 2061 nt11.29□□□□□ -0.6
TY2A-LR1P0C2J4 YIL100WYIL100W 354 nt11.29□□□□□ -0.6
TY2A-LR1P0C2J4 FMP45YDL222C 930 nt11.28□□□□□ -0.6
TY2A-LR1P0C2J4 YDR433WYDR433W 441 nt11.25□□□□□ -0.61
TY2A-LR1P0C2J4 TCD2YKL027W 1344 nt11.2□□□□□ -0.62
TY2A-LR1P0C2J4 LPX1YOR084W 1164 nt11.18□□□□□ -0.62
TY2A-LR1P0C2J4 TAT1YBR069C 1860 nt11.18□□□□□ -0.62
TY2A-LR1P0C2J4 ERV46YAL042W 1248 nt11.17□□□□□ -0.62
TY2A-LR1P0C2J4 YNL195CYNL195C 786 nt11.16□□□□□ -0.62
TY2A-LR1P0C2J4 RRD1YIL153W 1182 nt11.15□□□□□ -0.62
TY2A-LR1P0C2J4 MXR2YCL033C 507 nt11.14□□□□□ -0.63
TY2A-LR1P0C2J4 YSC84YHR016C 1407 nt11.14□□□□□ -0.63
TY2A-LR1P0C2J4 DED1YOR204W 1815 nt11.1□□□□□ -0.63
TY2A-LR1P0C2J4 SEC11YIR022W 504 nt11.09□□□□□ -0.63
TY2A-LR1P0C2J4 YKR040CYKR040C 504 nt11.09□□□□□ -0.63
TY2A-LR1P0C2J4 RRT12YCR045C 1476 nt11.07□□□□□ -0.64
TY2A-LR1P0C2J4 YHL050CYHL050C 2094 nt11.04□□□□□ -0.64
TY2A-LR1P0C2J4 FMP52YER004W 696 nt11.04□□□□□ -0.64
TY2A-LR1P0C2J4 PCH2YBR186W 1695 nt11.01□□□□□ -0.65
TY2A-LR1P0C2J4 FMT1YBL013W 1206 nt11□□□□□ -0.65
TY2A-LR1P0C2J4 YCL042WYCL042W 360 nt10.98□□□□□ -0.65
TY2A-LR1P0C2J4 SOR2YDL246C 1074 nt10.95□□□□□ -0.66
TY2A-LR1P0C2J4 SOR1YJR159W 1074 nt10.95□□□□□ -0.66
TY2A-LR1P0C2J4 CWP1YKL096W 720 nt10.95□□□□□ -0.66
TY2A-LR1P0C2J4 FRD1YEL047C 1413 nt10.94□□□□□ -0.66
TY2A-LR1P0C2J4 GUT2YIL155C 1950 nt10.94□□□□□ -0.66
TY2A-LR1P0C2J4 SPP1YPL138C 1062 nt10.93□□□□□ -0.66
TY2A-LR1P0C2J4 PCM1YEL058W 1674 nt10.92□□□□□ -0.66
TY2A-LR1P0C2J4 ADH2YMR303C 1047 nt10.91□□□□□ -0.66
TY2A-LR1P0C2J4 SNF6YHL025W 999 nt10.87□□□□□ -0.67
TY2A-LR1P0C2J4 PAC11YDR488C 1602 nt10.79□□□□□ -0.68
TY2A-LR1P0C2J4 RTF1YGL244W 1677 nt10.79□□□□□ -0.68
TY2A-LR1P0C2J4 SIM1YIL123W 1431 nt10.78□□□□□ -0.68
TY2A-LR1P0C2J4 LCB1YMR296C 1677 nt10.77□□□□□ -0.69
TY2A-LR1P0C2J4 PTH1YHR189W 573 nt10.77□□□□□ -0.69
TY2A-LR1P0C2J4 BOP3YNL042W 1191 nt10.77□□□□□ -0.69
TY2A-LR1P0C2J4 BIO4YNR057C 714 nt10.74□□□□□ -0.69
TY2A-LR1P0C2J4 YLR235CYLR235C 399 nt10.73□□□□□ -0.69
TY2A-LR1P0C2J4 DIC1YLR348C 897 nt10.73□□□□□ -0.69
TY2A-LR1P0C2J4 PIB2YGL023C 1908 nt10.72□□□□□ -0.69
TY2A-LR1P0C2J4 YIH1YCR059C 777 nt10.72□□□□□ -0.69
TY2A-LR1P0C2J4 RNQ1YCL028W 1218 nt10.71□□□□□ -0.69
TY2A-LR1P0C2J4 NCP1YHR042W 2076 nt10.7□□□□□ -0.7
TY2A-LR1P0C2J4 RTG1YOL067C 534 nt10.66□□□□□ -0.7
TY2A-LR1P0C2J4 YLL053CYLL053C 459 nt10.65□□□□□ -0.7
TY2A-LR1P0C2J4 YKL030WYKL030W 606 nt10.64□□□□□ -0.71
TY2A-LR1P0C2J4 MRPL8YJL063C 717 nt10.62□□□□□ -0.71
TY2A-LR1P0C2J4 TIM23YNR017W 669 nt10.62□□□□□ -0.71
TY2A-LR1P0C2J4 YEL076C-AYEL076C-A 651 nt10.61□□□□□ -0.71
TY2A-LR1P0C2J4 YEL076CYEL076C 651 nt10.61□□□□□ -0.71
TY2A-LR1P0C2J4 YLR464WYLR464W 651 nt10.61□□□□□ -0.71
TY2A-LR1P0C2J4 ERF2YLR246W 1080 nt10.59□□□□□ -0.71
TY2A-LR1P0C2J4 FTR1YER145C 1215 nt10.57□□□□□ -0.72
TY2A-LR1P0C2J4 YLR179CYLR179C 606 nt10.57□□□□□ -0.72
TY2A-LR1P0C2J4 PTK1YKL198C 1989 nt10.57□□□□□ -0.72
TY2A-LR1P0C2J4 ADO1YJR105W 1023 nt10.56□□□□□ -0.72
TY2A-LR1P0C2J4 CRR1YLR213C 1269 nt10.54□□□□□ -0.72
TY2A-LR1P0C2J4 GAL1YBR020W 1587 nt10.54□□□□□ -0.72
TY2A-LR1P0C2J4 HUA1YGR268C 597 nt10.53□□□□□ -0.72
TY2A-LR1P0C2J4 TRM5YHR070W 1500 nt10.52□□□□□ -0.73
TY2A-LR1P0C2J4 LYS4YDR234W 2082 nt10.51□□□□□ -0.73
TY2A-LR1P0C2J4 AQY1YPR192W 918 nt10.51□□□□□ -0.73
TY2A-LR1P0C2J4 ATF2YGR177C 1608 nt10.51□□□□□ -0.73
TY2A-LR1P0C2J4 YFL067WYFL067W 528 nt10.5□□□□□ -0.73
TY2A-LR1P0C2J4 DDR2YOL052C-A 186 nt10.47□□□□□ -0.73
TY2A-LR1P0C2J4 YPR064WYPR064W 420 nt10.46□□□□□ -0.73
Retrieved 100 of 7,029 protein–RNA pairs in 8.5 ms