Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC17.58■□□□□ 0.4
Trbv1A0A0B4J1G7 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC17.58■□□□□ 0.4
Trbv1A0A0B4J1G7 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trbv1A0A0B4J1G7 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trbv1A0A0B4J1G7 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trbv1A0A0B4J1G7 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Trbv1A0A0B4J1G7 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trbv1A0A0B4J1G7 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trbv1A0A0B4J1G7 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trbv1A0A0B4J1G7 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trbv1A0A0B4J1G7 Gm38160-201ENSMUST00000193090 2499 ntBASIC17.57■□□□□ 0.4
Trbv1A0A0B4J1G7 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC17.56■□□□□ 0.4
Trbv1A0A0B4J1G7 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Trbv1A0A0B4J1G7 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Trbv1A0A0B4J1G7 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trbv1A0A0B4J1G7 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trbv1A0A0B4J1G7 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trbv1A0A0B4J1G7 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC17.55■□□□□ 0.4
Trbv1A0A0B4J1G7 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trbv1A0A0B4J1G7 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trbv1A0A0B4J1G7 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trbv1A0A0B4J1G7 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC17.54■□□□□ 0.4
Trbv1A0A0B4J1G7 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
Trbv1A0A0B4J1G7 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC17.54■□□□□ 0.4
Trbv1A0A0B4J1G7 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Trbv1A0A0B4J1G7 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trbv1A0A0B4J1G7 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
Trbv1A0A0B4J1G7 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trbv1A0A0B4J1G7 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trbv1A0A0B4J1G7 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC17.53■□□□□ 0.4
Trbv1A0A0B4J1G7 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC17.53■□□□□ 0.4
Trbv1A0A0B4J1G7 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trbv1A0A0B4J1G7 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trbv1A0A0B4J1G7 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Trbv1A0A0B4J1G7 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trbv1A0A0B4J1G7 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trbv1A0A0B4J1G7 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trbv1A0A0B4J1G7 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trbv1A0A0B4J1G7 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trbv1A0A0B4J1G7 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trbv1A0A0B4J1G7 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
Trbv1A0A0B4J1G7 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trbv1A0A0B4J1G7 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trbv1A0A0B4J1G7 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trbv1A0A0B4J1G7 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trbv1A0A0B4J1G7 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC17.51■□□□□ 0.39
Trbv1A0A0B4J1G7 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trbv1A0A0B4J1G7 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trbv1A0A0B4J1G7 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC17.5■□□□□ 0.39
Trbv1A0A0B4J1G7 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trbv1A0A0B4J1G7 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC17.5■□□□□ 0.39
Trbv1A0A0B4J1G7 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trbv1A0A0B4J1G7 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trbv1A0A0B4J1G7 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trbv1A0A0B4J1G7 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trbv1A0A0B4J1G7 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trbv1A0A0B4J1G7 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trbv1A0A0B4J1G7 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Trbv1A0A0B4J1G7 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trbv1A0A0B4J1G7 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trbv1A0A0B4J1G7 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC17.48■□□□□ 0.39
Trbv1A0A0B4J1G7 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trbv1A0A0B4J1G7 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trbv1A0A0B4J1G7 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Trbv1A0A0B4J1G7 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Trbv1A0A0B4J1G7 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC17.47■□□□□ 0.39
Trbv1A0A0B4J1G7 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trbv1A0A0B4J1G7 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trbv1A0A0B4J1G7 Gm6934-201ENSMUST00000194780 1905 ntBASIC17.47■□□□□ 0.39
Trbv1A0A0B4J1G7 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Trbv1A0A0B4J1G7 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trbv1A0A0B4J1G7 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC17.47■□□□□ 0.39
Trbv1A0A0B4J1G7 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Trbv1A0A0B4J1G7 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trbv1A0A0B4J1G7 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Trbv1A0A0B4J1G7 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trbv1A0A0B4J1G7 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trbv1A0A0B4J1G7 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trbv1A0A0B4J1G7 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Trbv1A0A0B4J1G7 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trbv1A0A0B4J1G7 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trbv1A0A0B4J1G7 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
Trbv1A0A0B4J1G7 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trbv1A0A0B4J1G7 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Trbv1A0A0B4J1G7 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trbv1A0A0B4J1G7 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Trbv1A0A0B4J1G7 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Trbv1A0A0B4J1G7 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC17.45■□□□□ 0.38
Trbv1A0A0B4J1G7 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trbv1A0A0B4J1G7 Gm26766-202ENSMUST00000227544 2347 ntBASIC17.45■□□□□ 0.38
Trbv1A0A0B4J1G7 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trbv1A0A0B4J1G7 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trbv1A0A0B4J1G7 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trbv1A0A0B4J1G7 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
Trbv1A0A0B4J1G7 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
Trbv1A0A0B4J1G7 Nkain2-201ENSMUST00000092602 558 ntBASIC17.44■□□□□ 0.38
Trbv1A0A0B4J1G7 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trbv1A0A0B4J1G7 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trbv1A0A0B4J1G7 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trbv1A0A0B4J1G7 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms