Protein–RNA interactions for Protein: Q8CHD8

Rab11fip3, Rab11 family-interacting protein 3, mousemouse

Predictions only

Length 1,047 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rab11fip3Q8CHD8 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
Rab11fip3Q8CHD8 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
Rab11fip3Q8CHD8 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC29.8■■■□□ 2.36
Rab11fip3Q8CHD8 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
Rab11fip3Q8CHD8 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
Rab11fip3Q8CHD8 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC29.8■■■□□ 2.36
Rab11fip3Q8CHD8 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
Rab11fip3Q8CHD8 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
Rab11fip3Q8CHD8 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
Rab11fip3Q8CHD8 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC29.79■■■□□ 2.36
Rab11fip3Q8CHD8 Gm44428-201ENSMUST00000204474 874 ntBASIC29.79■■■□□ 2.36
Rab11fip3Q8CHD8 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
Rab11fip3Q8CHD8 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC29.78■■■□□ 2.36
Rab11fip3Q8CHD8 AC151971.4-201ENSMUST00000214717 704 ntBASIC29.78■■■□□ 2.36
Rab11fip3Q8CHD8 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC29.78■■■□□ 2.36
Rab11fip3Q8CHD8 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
Rab11fip3Q8CHD8 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC29.78■■■□□ 2.36
Rab11fip3Q8CHD8 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC29.78■■■□□ 2.36
Rab11fip3Q8CHD8 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC29.77■■■□□ 2.36
Rab11fip3Q8CHD8 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC29.76■■■□□ 2.35
Rab11fip3Q8CHD8 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC29.76■■■□□ 2.35
Rab11fip3Q8CHD8 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC29.76■■■□□ 2.35
Rab11fip3Q8CHD8 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC29.75■■■□□ 2.35
Rab11fip3Q8CHD8 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC29.74■■■□□ 2.35
Rab11fip3Q8CHD8 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
Rab11fip3Q8CHD8 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
Rab11fip3Q8CHD8 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC29.72■■■□□ 2.35
Rab11fip3Q8CHD8 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
Rab11fip3Q8CHD8 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
Rab11fip3Q8CHD8 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC29.71■■■□□ 2.35
Rab11fip3Q8CHD8 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
Rab11fip3Q8CHD8 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
Rab11fip3Q8CHD8 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC29.7■■■□□ 2.34
Rab11fip3Q8CHD8 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC29.69■■■□□ 2.34
Rab11fip3Q8CHD8 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
Rab11fip3Q8CHD8 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC29.69■■■□□ 2.34
Rab11fip3Q8CHD8 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC29.69■■■□□ 2.34
Rab11fip3Q8CHD8 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC29.68■■■□□ 2.34
Rab11fip3Q8CHD8 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC29.67■■■□□ 2.34
Rab11fip3Q8CHD8 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
Rab11fip3Q8CHD8 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
Rab11fip3Q8CHD8 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC29.67■■■□□ 2.34
Rab11fip3Q8CHD8 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC29.65■■■□□ 2.34
Rab11fip3Q8CHD8 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
Rab11fip3Q8CHD8 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC29.65■■■□□ 2.34
Rab11fip3Q8CHD8 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC29.65■■■□□ 2.34
Rab11fip3Q8CHD8 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
Rab11fip3Q8CHD8 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC29.64■■■□□ 2.34
Rab11fip3Q8CHD8 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
Rab11fip3Q8CHD8 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
Rab11fip3Q8CHD8 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
Rab11fip3Q8CHD8 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC29.62■■■□□ 2.33
Rab11fip3Q8CHD8 Gm10420-201ENSMUST00000121713 882 ntBASIC29.62■■■□□ 2.33
Rab11fip3Q8CHD8 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
Rab11fip3Q8CHD8 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC29.61■■■□□ 2.33
Rab11fip3Q8CHD8 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC29.61■■■□□ 2.33
Rab11fip3Q8CHD8 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC29.61■■■□□ 2.33
Rab11fip3Q8CHD8 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC29.61■■■□□ 2.33
Rab11fip3Q8CHD8 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC29.61■■■□□ 2.33
Rab11fip3Q8CHD8 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
Rab11fip3Q8CHD8 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
Rab11fip3Q8CHD8 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
Rab11fip3Q8CHD8 Gm5067-201ENSMUST00000170449 1009 ntBASIC29.6■■■□□ 2.33
Rab11fip3Q8CHD8 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
Rab11fip3Q8CHD8 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC29.6■■■□□ 2.33
Rab11fip3Q8CHD8 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
Rab11fip3Q8CHD8 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
Rab11fip3Q8CHD8 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
Rab11fip3Q8CHD8 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC29.58■■■□□ 2.33
Rab11fip3Q8CHD8 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
Rab11fip3Q8CHD8 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
Rab11fip3Q8CHD8 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC29.57■■■□□ 2.32
Rab11fip3Q8CHD8 AC122428.3-201ENSMUST00000215551 2290 ntBASIC29.56■■■□□ 2.32
Rab11fip3Q8CHD8 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
Rab11fip3Q8CHD8 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
Rab11fip3Q8CHD8 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
Rab11fip3Q8CHD8 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC29.55■■■□□ 2.32
Rab11fip3Q8CHD8 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
Rab11fip3Q8CHD8 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Rab11fip3Q8CHD8 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Rab11fip3Q8CHD8 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Rab11fip3Q8CHD8 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC29.53■■■□□ 2.32
Rab11fip3Q8CHD8 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
Rab11fip3Q8CHD8 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
Rab11fip3Q8CHD8 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
Rab11fip3Q8CHD8 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
Rab11fip3Q8CHD8 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
Rab11fip3Q8CHD8 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
Rab11fip3Q8CHD8 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
Rab11fip3Q8CHD8 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC29.52■■■□□ 2.32
Rab11fip3Q8CHD8 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC29.52■■■□□ 2.32
Rab11fip3Q8CHD8 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
Rab11fip3Q8CHD8 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC29.52■■■□□ 2.32
Rab11fip3Q8CHD8 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
Rab11fip3Q8CHD8 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
Rab11fip3Q8CHD8 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
Rab11fip3Q8CHD8 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
Rab11fip3Q8CHD8 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
Rab11fip3Q8CHD8 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC29.51■■■□□ 2.31
Rab11fip3Q8CHD8 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
Retrieved 100 of 76,532 protein–RNA pairs in 9.9 ms