Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.44
Trim28Q62318 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC30.32■■■□□ 2.44
Trim28Q62318 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Trim28Q62318 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Trim28Q62318 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Trim28Q62318 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Trim28Q62318 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Trim28Q62318 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Trim28Q62318 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
Trim28Q62318 Gm7332-201ENSMUST00000118351 454 ntBASIC30.29■■■□□ 2.44
Trim28Q62318 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Trim28Q62318 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
Trim28Q62318 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC30.28■■■□□ 2.44
Trim28Q62318 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Trim28Q62318 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC30.27■■■□□ 2.44
Trim28Q62318 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Trim28Q62318 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC30.26■■■□□ 2.43
Trim28Q62318 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Trim28Q62318 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC30.25■■■□□ 2.43
Trim28Q62318 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Trim28Q62318 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
Trim28Q62318 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Trim28Q62318 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Trim28Q62318 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC30.23■■■□□ 2.43
Trim28Q62318 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
Trim28Q62318 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC30.23■■■□□ 2.43
Trim28Q62318 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC30.23■■■□□ 2.43
Trim28Q62318 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
Trim28Q62318 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Trim28Q62318 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC30.22■■■□□ 2.43
Trim28Q62318 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Trim28Q62318 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Trim28Q62318 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
Trim28Q62318 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Trim28Q62318 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Trim28Q62318 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
Trim28Q62318 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC30.21■■■□□ 2.43
Trim28Q62318 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
Trim28Q62318 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
Trim28Q62318 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC30.19■■■□□ 2.42
Trim28Q62318 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC30.19■■■□□ 2.42
Trim28Q62318 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
Trim28Q62318 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
Trim28Q62318 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
Trim28Q62318 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC30.17■■■□□ 2.42
Trim28Q62318 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC30.17■■■□□ 2.42
Trim28Q62318 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC30.17■■■□□ 2.42
Trim28Q62318 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Trim28Q62318 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC30.16■■■□□ 2.42
Trim28Q62318 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
Trim28Q62318 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC30.15■■■□□ 2.42
Trim28Q62318 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Trim28Q62318 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Trim28Q62318 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC30.14■■■□□ 2.42
Trim28Q62318 Gm44428-201ENSMUST00000204474 874 ntBASIC30.14■■■□□ 2.42
Trim28Q62318 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
Trim28Q62318 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
Trim28Q62318 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
Trim28Q62318 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
Trim28Q62318 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC30.12■■■□□ 2.41
Trim28Q62318 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC30.11■■■□□ 2.41
Trim28Q62318 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC30.11■■■□□ 2.41
Trim28Q62318 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC30.11■■■□□ 2.41
Trim28Q62318 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
Trim28Q62318 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC30.11■■■□□ 2.41
Trim28Q62318 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Trim28Q62318 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC30.1■■■□□ 2.41
Trim28Q62318 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Trim28Q62318 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC30.1■■■□□ 2.41
Trim28Q62318 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
Trim28Q62318 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
Trim28Q62318 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
Trim28Q62318 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC30.09■■■□□ 2.41
Trim28Q62318 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC30.09■■■□□ 2.41
Trim28Q62318 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC30.09■■■□□ 2.41
Trim28Q62318 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
Trim28Q62318 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC30.08■■■□□ 2.41
Trim28Q62318 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
Trim28Q62318 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
Trim28Q62318 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
Trim28Q62318 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC30.07■■■□□ 2.4
Trim28Q62318 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
Trim28Q62318 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
Trim28Q62318 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC30.07■■■□□ 2.4
Trim28Q62318 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
Trim28Q62318 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Trim28Q62318 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
Trim28Q62318 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
Trim28Q62318 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC30.05■■■□□ 2.4
Trim28Q62318 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC30.04■■■□□ 2.4
Trim28Q62318 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC30.03■■■□□ 2.4
Trim28Q62318 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Trim28Q62318 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Trim28Q62318 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC30.02■■■□□ 2.4
Trim28Q62318 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
Trim28Q62318 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
Trim28Q62318 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
Trim28Q62318 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC30.02■■■□□ 2.4
Trim28Q62318 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC30.01■■■□□ 2.4
Trim28Q62318 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC30.01■■■□□ 2.4
Retrieved 100 of 76,532 protein–RNA pairs in 14.9 ms