Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC28.94■■■□□ 2.22
Col4a1P02463 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC28.93■■■□□ 2.22
Col4a1P02463 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
Col4a1P02463 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC28.91■■■□□ 2.22
Col4a1P02463 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
Col4a1P02463 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC28.9■■■□□ 2.22
Col4a1P02463 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
Col4a1P02463 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
Col4a1P02463 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
Col4a1P02463 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC28.89■■■□□ 2.21
Col4a1P02463 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC28.88■■■□□ 2.21
Col4a1P02463 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
Col4a1P02463 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC28.87■■■□□ 2.21
Col4a1P02463 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC28.86■■■□□ 2.21
Col4a1P02463 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
Col4a1P02463 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
Col4a1P02463 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
Col4a1P02463 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC28.85■■■□□ 2.21
Col4a1P02463 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
Col4a1P02463 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
Col4a1P02463 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC28.84■■■□□ 2.21
Col4a1P02463 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
Col4a1P02463 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
Col4a1P02463 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC28.82■■■□□ 2.2
Col4a1P02463 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
Col4a1P02463 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
Col4a1P02463 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC28.82■■■□□ 2.2
Col4a1P02463 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
Col4a1P02463 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Col4a1P02463 Gm5921-201ENSMUST00000075898 882 ntBASIC28.81■■■□□ 2.2
Col4a1P02463 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Col4a1P02463 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC28.81■■■□□ 2.2
Col4a1P02463 Gm4419-202ENSMUST00000226239 1431 ntBASIC28.81■■■□□ 2.2
Col4a1P02463 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC28.8■■■□□ 2.2
Col4a1P02463 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC28.8■■■□□ 2.2
Col4a1P02463 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC28.8■■■□□ 2.2
Col4a1P02463 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC28.79■■■□□ 2.2
Col4a1P02463 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC28.79■■■□□ 2.2
Col4a1P02463 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
Col4a1P02463 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
Col4a1P02463 Gm5812-201ENSMUST00000061073 957 ntBASIC28.79■■■□□ 2.2
Col4a1P02463 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
Col4a1P02463 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
Col4a1P02463 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC28.77■■■□□ 2.2
Col4a1P02463 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC28.77■■■□□ 2.2
Col4a1P02463 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
Col4a1P02463 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
Col4a1P02463 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC28.76■■■□□ 2.2
Col4a1P02463 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
Col4a1P02463 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
Col4a1P02463 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
Col4a1P02463 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
Col4a1P02463 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
Col4a1P02463 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
Col4a1P02463 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
Col4a1P02463 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
Col4a1P02463 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
Col4a1P02463 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
Col4a1P02463 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC28.7■■■□□ 2.19
Col4a1P02463 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
Col4a1P02463 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
Col4a1P02463 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
Col4a1P02463 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
Col4a1P02463 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
Col4a1P02463 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
Col4a1P02463 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC28.7■■■□□ 2.18
Col4a1P02463 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC28.7■■■□□ 2.18
Col4a1P02463 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
Col4a1P02463 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC28.69■■■□□ 2.18
Col4a1P02463 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Col4a1P02463 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC28.69■■■□□ 2.18
Col4a1P02463 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC28.68■■■□□ 2.18
Col4a1P02463 Gm44428-201ENSMUST00000204474 874 ntBASIC28.68■■■□□ 2.18
Col4a1P02463 Gm13238-201ENSMUST00000117655 780 ntBASIC28.67■■■□□ 2.18
Col4a1P02463 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC28.67■■■□□ 2.18
Col4a1P02463 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC28.67■■■□□ 2.18
Col4a1P02463 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
Col4a1P02463 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC28.66■■■□□ 2.18
Col4a1P02463 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
Col4a1P02463 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
Col4a1P02463 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
Col4a1P02463 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC28.64■■■□□ 2.17
Col4a1P02463 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC28.64■■■□□ 2.17
Col4a1P02463 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC28.64■■■□□ 2.17
Col4a1P02463 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Col4a1P02463 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC28.63■■■□□ 2.17
Col4a1P02463 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC28.62■■■□□ 2.17
Col4a1P02463 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC28.62■■■□□ 2.17
Col4a1P02463 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Col4a1P02463 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC28.62■■■□□ 2.17
Col4a1P02463 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC28.61■■■□□ 2.17
Col4a1P02463 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC28.61■■■□□ 2.17
Col4a1P02463 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
Col4a1P02463 Fezf2-202ENSMUST00000224023 1917 ntBASIC28.61■■■□□ 2.17
Col4a1P02463 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC28.6■■■□□ 2.17
Col4a1P02463 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
Col4a1P02463 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC28.59■■■□□ 2.17
Col4a1P02463 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
Col4a1P02463 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC28.58■■■□□ 2.17
Col4a1P02463 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC28.58■■■□□ 2.17
Retrieved 100 of 76,532 protein–RNA pairs in 48.9 ms