Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
Trim56Q80VI1 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC27.41■■□□□ 1.98
Trim56Q80VI1 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC27.4■■□□□ 1.98
Trim56Q80VI1 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
Trim56Q80VI1 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC27.4■■□□□ 1.98
Trim56Q80VI1 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
Trim56Q80VI1 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
Trim56Q80VI1 Gm11175-201ENSMUST00000116172 543 ntBASIC27.39■■□□□ 1.98
Trim56Q80VI1 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
Trim56Q80VI1 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
Trim56Q80VI1 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
Trim56Q80VI1 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC27.37■■□□□ 1.97
Trim56Q80VI1 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
Trim56Q80VI1 Gm12818-201ENSMUST00000117562 1349 ntBASIC27.37■■□□□ 1.97
Trim56Q80VI1 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC27.36■■□□□ 1.97
Trim56Q80VI1 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
Trim56Q80VI1 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
Trim56Q80VI1 Pkd1-207ENSMUST00000228550 1050 ntBASIC27.36■■□□□ 1.97
Trim56Q80VI1 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
Trim56Q80VI1 Gm4419-202ENSMUST00000226239 1431 ntBASIC27.35■■□□□ 1.97
Trim56Q80VI1 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC27.35■■□□□ 1.97
Trim56Q80VI1 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC27.35■■□□□ 1.97
Trim56Q80VI1 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
Trim56Q80VI1 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
Trim56Q80VI1 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
Trim56Q80VI1 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Trim56Q80VI1 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Trim56Q80VI1 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Trim56Q80VI1 Gm9812-201ENSMUST00000061934 968 ntBASIC27.32■■□□□ 1.96
Trim56Q80VI1 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
Trim56Q80VI1 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC27.32■■□□□ 1.96
Trim56Q80VI1 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
Trim56Q80VI1 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Trim56Q80VI1 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
Trim56Q80VI1 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
Trim56Q80VI1 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC27.3■■□□□ 1.96
Trim56Q80VI1 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
Trim56Q80VI1 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Trim56Q80VI1 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
Trim56Q80VI1 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
Trim56Q80VI1 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC27.3■■□□□ 1.96
Trim56Q80VI1 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Trim56Q80VI1 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC27.29■■□□□ 1.96
Trim56Q80VI1 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
Trim56Q80VI1 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC27.28■■□□□ 1.96
Trim56Q80VI1 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Trim56Q80VI1 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC27.28■■□□□ 1.96
Trim56Q80VI1 AC122317.2-201ENSMUST00000218708 1248 ntBASIC27.28■■□□□ 1.96
Trim56Q80VI1 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Trim56Q80VI1 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Trim56Q80VI1 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
Trim56Q80VI1 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC27.25■■□□□ 1.95
Trim56Q80VI1 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
Trim56Q80VI1 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
Trim56Q80VI1 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Trim56Q80VI1 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Trim56Q80VI1 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC27.24■■□□□ 1.95
Trim56Q80VI1 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
Trim56Q80VI1 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC27.23■■□□□ 1.95
Trim56Q80VI1 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC27.23■■□□□ 1.95
Trim56Q80VI1 Scarna2-201ENSMUST00000157560 414 ntBASIC27.23■■□□□ 1.95
Trim56Q80VI1 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC27.22■■□□□ 1.95
Trim56Q80VI1 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC27.22■■□□□ 1.95
Trim56Q80VI1 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
Trim56Q80VI1 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC27.22■■□□□ 1.95
Trim56Q80VI1 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
Trim56Q80VI1 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
Trim56Q80VI1 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
Trim56Q80VI1 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC27.21■■□□□ 1.95
Trim56Q80VI1 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC27.21■■□□□ 1.95
Trim56Q80VI1 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
Trim56Q80VI1 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC27.2■■□□□ 1.95
Trim56Q80VI1 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
Trim56Q80VI1 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
Trim56Q80VI1 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
Trim56Q80VI1 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC27.19■■□□□ 1.94
Trim56Q80VI1 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC27.18■■□□□ 1.94
Trim56Q80VI1 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
Trim56Q80VI1 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
Trim56Q80VI1 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC27.18■■□□□ 1.94
Trim56Q80VI1 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
Trim56Q80VI1 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Trim56Q80VI1 Gm16437-201ENSMUST00000025669 507 ntBASIC27.16■■□□□ 1.94
Trim56Q80VI1 Gm9806-201ENSMUST00000051080 552 ntBASIC27.16■■□□□ 1.94
Trim56Q80VI1 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Trim56Q80VI1 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Trim56Q80VI1 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Trim56Q80VI1 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
Trim56Q80VI1 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC27.14■■□□□ 1.94
Trim56Q80VI1 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
Trim56Q80VI1 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC27.14■■□□□ 1.93
Trim56Q80VI1 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC27.14■■□□□ 1.93
Trim56Q80VI1 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC27.13■■□□□ 1.93
Trim56Q80VI1 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC27.13■■□□□ 1.93
Trim56Q80VI1 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
Trim56Q80VI1 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC27.13■■□□□ 1.93
Trim56Q80VI1 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
Trim56Q80VI1 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC27.13■■□□□ 1.93
Trim56Q80VI1 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Trim56Q80VI1 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
Retrieved 100 of 76,532 protein–RNA pairs in 55.8 ms