RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 AZIN1O14977 448 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 RASGRP1O95267 797 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 WNT1P04628 370 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 EPORP19235 508 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 ERVPABLB-1P60509 514 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 IFT88Q13099 833 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 TRAF3Q13114 568 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 EIF2B5Q13144 721 aaKnown RBP18.09■□□□□ 0.49
CLN3-206ENST00000360019 LRP8Q14114 963 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 KANK2Q63ZY3 851 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 LETMD1Q6P1Q0 360 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 ALYREFQ86V81 257 aaKnown RBP18.09■□□□□ 0.49
CLN3-206ENST00000360019 DCUN1D3Q8IWE4 304 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 CLYBLQ8N0X4 340 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 OR9A1PQ8NGU1 263 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 OR5K2Q8NHB8 316 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 ZNF480Q8WV37 535 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 KLHDC7BQ96G42 594 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 PPP1R36Q96LQ0 422 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 TCEAL2Q9H3H9 227 aaPredicted RBP18.09■□□□□ 0.49
CLN3-206ENST00000360019 HEY2Q9UBP5 337 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 KLF15Q9UIH9 416 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 A0A1W2PR77 199 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 TMEM221A6NGB7 291 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 PDZK1P1A8MUH7 402 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 M0R296 226 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 MAP3K13O43283 966 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 DIAPH2O60879 1101 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 SKAP2O75563 359 aaPredicted RBP18.09■□□□□ 0.49
CLN3-206ENST00000360019 WDR47O94967 919 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 EPB42P16452 691 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 ITPKAP23677 461 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 SERPINB3P29508 390 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 FNTBP49356 437 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 PKNOX1P55347 436 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 BTKQ06187 659 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 UAP1L1Q3KQV9 507 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 TTC23LQ6PF05 361 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 GPRIN3Q6ZVF9 776 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 FITM2Q8N6M3 262 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 PPFIBP2Q8ND30 876 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 FAM174AQ8TBP5 190 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 ATL1Q8WXF7 558 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 FAR2Q96K12 515 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 C12orf66Q96MD2 445 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 TRNAU1APQ9NX07 287 aaKnown RBP18.09■□□□□ 0.49
CLN3-206ENST00000360019 TBC1D29Q9UFV1 150 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 SLC22A14Q9Y267 594 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 ANGPTL3Q9Y5C1 460 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 DNAJC15Q9Y5T4 150 aa18.09■□□□□ 0.49
CLN3-206ENST00000360019 OR52A4PA6NMU1 304 aa18.08■□□□□ 0.48
CLN3-206ENST00000360019 OR4F21O95013 312 aa18.08■□□□□ 0.48
CLN3-206ENST00000360019 EML2O95834 649 aa18.08■□□□□ 0.48
CLN3-206ENST00000360019 RACK1P63244 317 aaKnown RBP18.08■□□□□ 0.48
CLN3-206ENST00000360019 NAE1Q13564 534 aa18.08■□□□□ 0.48
CLN3-206ENST00000360019 ZNF542PQ5EBM4 170 aa18.08■□□□□ 0.48
CLN3-206ENST00000360019 TRPM8Q7Z2W7 1104 aa18.08■□□□□ 0.48
CLN3-206ENST00000360019 NRROSQ86YC3 692 aa18.08■□□□□ 0.48
CLN3-206ENST00000360019 KLHDC8AQ8IYD2 350 aa18.08■□□□□ 0.48
CLN3-206ENST00000360019 MAML2Q8IZL2 1156 aaPredicted RBP18.08■□□□□ 0.48
CLN3-206ENST00000360019 KIRREL3Q8IZU9 778 aa18.08■□□□□ 0.48
CLN3-206ENST00000360019 AFAP1L2Q8N4X5 818 aa18.08■□□□□ 0.48
CLN3-206ENST00000360019 LMNTD1Q8N9Z9 388 aa18.08■□□□□ 0.48
CLN3-206ENST00000360019 MFSD2AQ8NA29 543 aa18.08■□□□□ 0.48
CLN3-206ENST00000360019 OR4F6Q8NGB9 312 aa18.08■□□□□ 0.48
CLN3-206ENST00000360019 OR56A3Q8NH54 315 aa18.08■□□□□ 0.48
CLN3-206ENST00000360019 C1orf216Q8TAB5 229 aa18.08■□□□□ 0.48
CLN3-206ENST00000360019 MAGEC3Q8TD91 643 aa18.08■□□□□ 0.48
CLN3-206ENST00000360019 RAD51AP1Q96B01 352 aa18.08■□□□□ 0.48
CLN3-206ENST00000360019 SKA1Q96BD8 255 aa18.08■□□□□ 0.48
CLN3-206ENST00000360019 OR52B2Q96RD2 323 aa18.08■□□□□ 0.48
CLN3-206ENST00000360019 MIR1-1HGQ9H1L0 117 aa18.08■□□□□ 0.48
CLN3-206ENST00000360019 WDR55Q9H6Y2 383 aaPredicted RBP18.08■□□□□ 0.48
CLN3-206ENST00000360019 INTS7Q9NVH2 962 aaKnown RBP18.08■□□□□ 0.48
CLN3-206ENST00000360019 SCHIP1Q9P0W5 487 aaPredicted RBP18.08■□□□□ 0.48
CLN3-206ENST00000360019 PLAGL1Q9UM63 463 aa18.08■□□□□ 0.48
CLN3-206ENST00000360019 CEP192Q8TEP8 1941 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 OTCP00480 354 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 TNFP01375 233 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 CD38P28907 300 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 EPHA3P29320 983 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 ACTR1BP42025 376 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 CCNG1P51959 295 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 ACTR1AP61163 376 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 PRKG2Q13237 762 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 SLC30A9Q6PML9 568 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 MTDHQ86UE4 582 aaKnown RBP18.07■□□□□ 0.48
CLN3-206ENST00000360019 PARGQ86W56 976 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 TBC1D21Q8IYX1 336 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 ATP6V1E2Q96A05 226 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 RILPQ96NA2 401 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 NRTNQ99748 197 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 DUSP15Q9H1R2 295 aaPredicted RBP18.07■□□□□ 0.48
CLN3-206ENST00000360019 TRIT1Q9H3H1 467 aaKnown RBP18.07■□□□□ 0.48
CLN3-206ENST00000360019 TM9SF3Q9HD45 589 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 IMP3Q9NV31 184 aaKnown RBP18.07■□□□□ 0.48
CLN3-206ENST00000360019 TDRKHQ9Y2W6 561 aaKnown RBP18.07■□□□□ 0.48
CLN3-206ENST00000360019 TIMM22Q9Y584 194 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 GOLGA8QA0A0J9YX86 632 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 GOLGA8OA6NCC3 632 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms