RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 PIKFYVEQ9Y2I7 2098 aa16.31■□□□□ 0.2
VPS29-204ENST00000548259 C3orf70A6NLC5 250 aaPredicted RBP16.31■□□□□ 0.2
VPS29-204ENST00000548259 JRKO75564 520 aa16.31■□□□□ 0.2
VPS29-204ENST00000548259 CRTAMO95727 393 aa16.31■□□□□ 0.2
VPS29-204ENST00000548259 ALBP02768 609 aa16.31■□□□□ 0.2
VPS29-204ENST00000548259 UMODP07911 640 aa16.31■□□□□ 0.2
VPS29-204ENST00000548259 CD68P34810 354 aaPredicted RBP16.31■□□□□ 0.2
VPS29-204ENST00000548259 ARHGAP25P42331 645 aa16.31■□□□□ 0.2
VPS29-204ENST00000548259 TPM4P67936 248 aa16.31■□□□□ 0.2
VPS29-204ENST00000548259 OTUD4Q01804 1114 aaKnown RBP16.31■□□□□ 0.2
VPS29-204ENST00000548259 PRKG2Q13237 762 aa16.31■□□□□ 0.2
VPS29-204ENST00000548259 DEFB110Q30KQ9 67 aa16.31■□□□□ 0.2
VPS29-204ENST00000548259 RPUSD3Q6P087 351 aaKnown RBP16.31■□□□□ 0.2
VPS29-204ENST00000548259 LILRA3Q8N6C8 439 aaPredicted RBP16.31■□□□□ 0.2
VPS29-204ENST00000548259 PHC3Q8NDX5 983 aa16.31■□□□□ 0.2
VPS29-204ENST00000548259 RELTQ969Z4 430 aa16.31■□□□□ 0.2
VPS29-204ENST00000548259 GBP4Q96PP9 640 aa16.31■□□□□ 0.2
VPS29-204ENST00000548259 SLX1AQ9BQ83 275 aa16.31■□□□□ 0.2
VPS29-204ENST00000548259 FERMT1Q9BQL6 677 aa16.31■□□□□ 0.2
VPS29-204ENST00000548259 OR52A5Q9H2C5 316 aa16.31■□□□□ 0.2
VPS29-204ENST00000548259 XKR8Q9H6D3 395 aa16.31■□□□□ 0.2
VPS29-204ENST00000548259 WDR54Q9H977 334 aa16.31■□□□□ 0.2
VPS29-204ENST00000548259 FAM60AQ9NP50 221 aa16.31■□□□□ 0.2
VPS29-204ENST00000548259 SLC6A20Q9NP91 592 aa16.31■□□□□ 0.2
VPS29-204ENST00000548259 POLG2Q9UHN1 485 aa16.31■□□□□ 0.2
VPS29-204ENST00000548259 RSPH14Q9UHP6 348 aa16.31■□□□□ 0.2
VPS29-204ENST00000548259 NXT1Q9UKK6 140 aaKnown RBP16.31■□□□□ 0.2
VPS29-204ENST00000548259 CSAG2Q9Y5P2 127 aa16.31■□□□□ 0.2
VPS29-204ENST00000548259 ARL5AQ9Y689 179 aa16.31■□□□□ 0.2
VPS29-204ENST00000548259 A0A0J9YY10 115 aa16.3■□□□□ 0.2
VPS29-204ENST00000548259 KRT38O76015 456 aa16.3■□□□□ 0.2
VPS29-204ENST00000548259 ANXA9O76027 345 aa16.3■□□□□ 0.2
VPS29-204ENST00000548259 COX6B1P14854 86 aa16.3■□□□□ 0.2
VPS29-204ENST00000548259 UGT2B7P16662 529 aa16.3■□□□□ 0.2
VPS29-204ENST00000548259 GEMP55040 296 aa16.3■□□□□ 0.2
VPS29-204ENST00000548259 WASHC5Q12768 1159 aa16.3■□□□□ 0.2
VPS29-204ENST00000548259 BOP1Q14137 746 aaKnown RBP16.3■□□□□ 0.2
VPS29-204ENST00000548259 SLC5A12Q1EHB4 618 aa16.3■□□□□ 0.2
VPS29-204ENST00000548259 TUBB8Q3ZCM7 444 aa16.3■□□□□ 0.2
VPS29-204ENST00000548259 VWA2Q5GFL6 755 aa16.3■□□□□ 0.2
VPS29-204ENST00000548259 ISLR2Q6UXK2 745 aa16.3■□□□□ 0.2
VPS29-204ENST00000548259 NXPE1Q8N323 547 aa16.3■□□□□ 0.2
VPS29-204ENST00000548259 P3H4Q92791 437 aa16.3■□□□□ 0.2
VPS29-204ENST00000548259 RNF25Q96BH1 459 aaPredicted RBP16.3■□□□□ 0.2
VPS29-204ENST00000548259 LRRC45Q96CN5 670 aa16.3■□□□□ 0.2
VPS29-204ENST00000548259 OXNAD1Q96HP4 312 aaPredicted RBP16.3■□□□□ 0.2
VPS29-204ENST00000548259 MAGEB10Q96LZ2 347 aaPredicted RBP16.3■□□□□ 0.2
VPS29-204ENST00000548259 LMF1Q96S06 567 aa16.3■□□□□ 0.2
VPS29-204ENST00000548259 OR6C2Q9NZP2 312 aa16.3■□□□□ 0.2
VPS29-204ENST00000548259 FKBPLQ9UIM3 349 aa16.3■□□□□ 0.2
VPS29-204ENST00000548259 CAPN11Q9UMQ6 739 aa16.3■□□□□ 0.2
VPS29-204ENST00000548259 F8P00451 2351 aa16.29■□□□□ 0.2
VPS29-204ENST00000548259 A0A1B0GX78 115 aa16.29■□□□□ 0.2
VPS29-204ENST00000548259 SGTAO43765 313 aa16.29■□□□□ 0.2
VPS29-204ENST00000548259 SPTBP11277 2137 aa16.29■□□□□ 0.2
VPS29-204ENST00000548259 PTPRCAPQ14761 206 aa16.29■□□□□ 0.2
VPS29-204ENST00000548259 INAQ16352 499 aa16.29■□□□□ 0.2
VPS29-204ENST00000548259 RBBP7Q16576 425 aa16.29■□□□□ 0.2
VPS29-204ENST00000548259 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.29■□□□□ 0.2
VPS29-204ENST00000548259 GPR33Q49SQ1 333 aa16.29■□□□□ 0.2
VPS29-204ENST00000548259 OVCH1Q7RTY7 1134 aa16.29■□□□□ 0.2
VPS29-204ENST00000548259 SNX20Q7Z614 316 aa16.29■□□□□ 0.2
VPS29-204ENST00000548259 TRIM73Q86UV7 250 aa16.29■□□□□ 0.2
VPS29-204ENST00000548259 NAT14Q8WUY8 206 aa16.29■□□□□ 0.2
VPS29-204ENST00000548259 LURAP1Q96LR2 239 aa16.29■□□□□ 0.2
VPS29-204ENST00000548259 C19orf43Q9BQ61 176 aa16.29■□□□□ 0.2
VPS29-204ENST00000548259 SEMA3GQ9NS98 782 aa16.29■□□□□ 0.2
VPS29-204ENST00000548259 ASF1AQ9Y294 204 aa16.29■□□□□ 0.2
VPS29-204ENST00000548259 DYTNA2CJ06 578 aa16.28■□□□□ 0.2
VPS29-204ENST00000548259 AGAP14A8MT82 685 aa16.28■□□□□ 0.2
VPS29-204ENST00000548259 H3BMH7 237 aa16.28■□□□□ 0.2
VPS29-204ENST00000548259 MASP2O00187 686 aa16.28■□□□□ 0.2
VPS29-204ENST00000548259 MBD3O95983 291 aa16.28■□□□□ 0.2
VPS29-204ENST00000548259 CHRM5P08912 532 aaPredicted RBP16.28■□□□□ 0.2
VPS29-204ENST00000548259 TMEM253P0C7T8 217 aa16.28■□□□□ 0.2
VPS29-204ENST00000548259 SLC1A1P43005 524 aa16.28■□□□□ 0.2
VPS29-204ENST00000548259 MFAP5Q13361 173 aa16.28■□□□□ 0.2
VPS29-204ENST00000548259 SLC18A3Q16572 532 aa16.28■□□□□ 0.2
VPS29-204ENST00000548259 YOD1Q5VVQ6 348 aaPredicted RBP16.28■□□□□ 0.2
VPS29-204ENST00000548259 ITPRIPL1Q6GPH6 555 aa16.28■□□□□ 0.2
VPS29-204ENST00000548259 RPTNQ6XPR3 784 aa16.28■□□□□ 0.2
VPS29-204ENST00000548259 UNC5AQ6ZN44 842 aa16.28■□□□□ 0.2
VPS29-204ENST00000548259 ZNF567Q8N184 647 aa16.28■□□□□ 0.2
VPS29-204ENST00000548259 OR1N1Q8NGS0 311 aa16.28■□□□□ 0.2
VPS29-204ENST00000548259 THOC3Q96J01 351 aaKnown RBP16.28■□□□□ 0.2
VPS29-204ENST00000548259 OR2A14Q96R47 310 aa16.28■□□□□ 0.2
VPS29-204ENST00000548259 ZDHHC3Q9NYG2 299 aa16.28■□□□□ 0.2
VPS29-204ENST00000548259 IL1RAPL1Q9NZN1 696 aa16.28■□□□□ 0.2
VPS29-204ENST00000548259 ICKQ9UPZ9 632 aa16.28■□□□□ 0.2
VPS29-204ENST00000548259 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.28■□□□□ 0.2
VPS29-204ENST00000548259 HACD1B0YJ81 288 aa16.27■□□□□ 0.2
VPS29-204ENST00000548259 ISM1B1AKI9 464 aa16.27■□□□□ 0.2
VPS29-204ENST00000548259 QSOX1O00391 747 aa16.27■□□□□ 0.2
VPS29-204ENST00000548259 CST8O60676 142 aa16.27■□□□□ 0.2
VPS29-204ENST00000548259 CNOT3O75175 753 aaKnown RBP16.27■□□□□ 0.2
VPS29-204ENST00000548259 AGTP01019 485 aa16.27■□□□□ 0.2
VPS29-204ENST00000548259 GABRA4P48169 554 aa16.27■□□□□ 0.2
VPS29-204ENST00000548259 ARG2P78540 354 aa16.27■□□□□ 0.2
VPS29-204ENST00000548259 FANCCQ00597 558 aa16.27■□□□□ 0.2
VPS29-204ENST00000548259 PRPSAP1Q14558 356 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 351 ms