RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 C17orf113A0A1B0GUU1 675 aa16.35■□□□□ 0.21
VPS29-204ENST00000548259 BTN3A3O00478 584 aa16.35■□□□□ 0.21
VPS29-204ENST00000548259 BUD23O43709 281 aaKnown RBP16.35■□□□□ 0.21
VPS29-204ENST00000548259 STSP08842 583 aa16.35■□□□□ 0.21
VPS29-204ENST00000548259 ATXN8OSP0DMR3 200 aa16.35■□□□□ 0.21
VPS29-204ENST00000548259 PIM1P11309 404 aaPredicted RBP16.35■□□□□ 0.21
VPS29-204ENST00000548259 PTPN3P26045 913 aa16.35■□□□□ 0.21
VPS29-204ENST00000548259 PTGER4P35408 488 aa16.35■□□□□ 0.21
VPS29-204ENST00000548259 CD151P48509 253 aa16.35■□□□□ 0.21
VPS29-204ENST00000548259 ART3Q13508 389 aa16.35■□□□□ 0.21
VPS29-204ENST00000548259 NOMO1Q15155 1222 aa16.35■□□□□ 0.21
VPS29-204ENST00000548259 HIF1AQ16665 826 aa16.35■□□□□ 0.21
VPS29-204ENST00000548259 PRAMEF13Q5VWM6 474 aa16.35■□□□□ 0.21
VPS29-204ENST00000548259 SPESP1Q6UW49 350 aa16.35■□□□□ 0.21
VPS29-204ENST00000548259 GDF7Q7Z4P5 450 aa16.35■□□□□ 0.21
VPS29-204ENST00000548259 PPP1R32Q7Z5V6 425 aa16.35■□□□□ 0.21
VPS29-204ENST00000548259 IPMKQ8NFU5 416 aa16.35■□□□□ 0.21
VPS29-204ENST00000548259 OR52E1Q8NGJ3 308 aa16.35■□□□□ 0.21
VPS29-204ENST00000548259 DLG3Q92796 817 aa16.35■□□□□ 0.21
VPS29-204ENST00000548259 CNDP1Q96KN2 507 aa16.35■□□□□ 0.21
VPS29-204ENST00000548259 VAT1Q99536 393 aa16.35■□□□□ 0.21
VPS29-204ENST00000548259 BPIFA3Q9BQP9 254 aa16.35■□□□□ 0.21
VPS29-204ENST00000548259 SUCOQ9UBS9 1254 aaKnown RBP16.35■□□□□ 0.21
VPS29-204ENST00000548259 CRLS1Q9UJA2 301 aa16.35■□□□□ 0.21
VPS29-204ENST00000548259 KLF2Q9Y5W3 355 aaPredicted RBP16.35■□□□□ 0.21
VPS29-204ENST00000548259 SRP72O76094 671 aaKnown RBP16.34■□□□□ 0.21
VPS29-204ENST00000548259 PVRP15151 417 aa16.34■□□□□ 0.21
VPS29-204ENST00000548259 NFKB1P19838 968 aa16.34■□□□□ 0.21
VPS29-204ENST00000548259 GRNP28799 593 aaKnown RBP16.34■□□□□ 0.21
VPS29-204ENST00000548259 CHRNA4P43681 627 aa16.34■□□□□ 0.21
VPS29-204ENST00000548259 PRLHRP49683 370 aa16.34■□□□□ 0.21
VPS29-204ENST00000548259 DYNLT1P63172 113 aa16.34■□□□□ 0.21
VPS29-204ENST00000548259 ZBED6P86452 979 aa16.34■□□□□ 0.21
VPS29-204ENST00000548259 TYRO3Q06418 890 aa16.34■□□□□ 0.21
VPS29-204ENST00000548259 MPP3Q13368 585 aa16.34■□□□□ 0.21
VPS29-204ENST00000548259 MESDQ14696 234 aa16.34■□□□□ 0.21
VPS29-204ENST00000548259 ANO6Q4KMQ2 910 aa16.34■□□□□ 0.21
VPS29-204ENST00000548259 KDELC1Q6UW63 502 aa16.34■□□□□ 0.21
VPS29-204ENST00000548259 NPNTQ6UXI9 565 aa16.34■□□□□ 0.21
VPS29-204ENST00000548259 DAAM2Q86T65 1068 aa16.34■□□□□ 0.21
VPS29-204ENST00000548259 FJX1Q86VR8 437 aa16.34■□□□□ 0.21
VPS29-204ENST00000548259 CPNE8Q86YQ8 564 aa16.34■□□□□ 0.21
VPS29-204ENST00000548259 PARP9Q8IXQ6 854 aa16.34■□□□□ 0.21
VPS29-204ENST00000548259 BCORP1Q8N888 145 aa16.34■□□□□ 0.21
VPS29-204ENST00000548259 COPS8Q99627 209 aa16.34■□□□□ 0.21
VPS29-204ENST00000548259 CHRNA10Q9GZZ6 450 aa16.34■□□□□ 0.21
VPS29-204ENST00000548259 ZBTB20Q9HC78 741 aaPredicted RBP16.34■□□□□ 0.21
VPS29-204ENST00000548259 CHST11Q9NPF2 352 aa16.34■□□□□ 0.21
VPS29-204ENST00000548259 OLAHQ9NV23 265 aa16.34■□□□□ 0.21
VPS29-204ENST00000548259 CDC23Q9UJX2 597 aa16.34■□□□□ 0.21
VPS29-204ENST00000548259 FBXL4Q9UKA2 621 aa16.34■□□□□ 0.21
VPS29-204ENST00000548259 CDYLQ9Y232 598 aa16.34■□□□□ 0.21
VPS29-204ENST00000548259 E2F3O00716 465 aa16.33■□□□□ 0.2
VPS29-204ENST00000548259 GAPDHSO14556 408 aaPredicted RBP16.33■□□□□ 0.2
VPS29-204ENST00000548259 KDM1AO60341 852 aa16.33■□□□□ 0.2
VPS29-204ENST00000548259 KRT1P04264 644 aa16.33■□□□□ 0.2
VPS29-204ENST00000548259 ITGAXP20702 1163 aa16.33■□□□□ 0.2
VPS29-204ENST00000548259 MMP11P24347 488 aa16.33■□□□□ 0.2
VPS29-204ENST00000548259 SHMT2P34897 504 aa16.33■□□□□ 0.2
VPS29-204ENST00000548259 RPA4Q13156 261 aa16.33■□□□□ 0.2
VPS29-204ENST00000548259 TFDP2Q14188 446 aa16.33■□□□□ 0.2
VPS29-204ENST00000548259 PRKD1Q15139 912 aaPredicted RBP16.33■□□□□ 0.2
VPS29-204ENST00000548259 MRPL14Q6P1L8 145 aaKnown RBP16.33■□□□□ 0.2
VPS29-204ENST00000548259 MTFR2Q6P444 385 aa16.33■□□□□ 0.2
VPS29-204ENST00000548259 IGFL2Q6UWQ7 119 aa16.33■□□□□ 0.2
VPS29-204ENST00000548259 PID1Q7Z2X4 250 aa16.33■□□□□ 0.2
VPS29-204ENST00000548259 MRGPRX2Q96LB1 330 aa16.33■□□□□ 0.2
VPS29-204ENST00000548259 FCRL5Q96RD9 977 aa16.33■□□□□ 0.2
VPS29-204ENST00000548259 MRM3Q9HC36 420 aaKnown RBP16.33■□□□□ 0.2
VPS29-204ENST00000548259 DDX56Q9NY93 547 aaKnown RBP16.33■□□□□ 0.2
VPS29-204ENST00000548259 DHCR7Q9UBM7 475 aaKnown RBP16.33■□□□□ 0.2
VPS29-204ENST00000548259 DIDO1Q9BTC0 2240 aaKnown RBP16.33■□□□□ 0.2
VPS29-204ENST00000548259 C5orf60A6NFR6 353 aa16.32■□□□□ 0.2
VPS29-204ENST00000548259 GOLGA6L22H0YM25 854 aa16.32■□□□□ 0.2
VPS29-204ENST00000548259 SEC16AO15027 2179 aa16.32■□□□□ 0.2
VPS29-204ENST00000548259 GSTM1P09488 218 aa16.32■□□□□ 0.2
VPS29-204ENST00000548259 ATP1B2P14415 290 aaPredicted RBP16.32■□□□□ 0.2
VPS29-204ENST00000548259 ITGALP20701 1170 aa16.32■□□□□ 0.2
VPS29-204ENST00000548259 ALAS2P22557 587 aa16.32■□□□□ 0.2
VPS29-204ENST00000548259 ARSFP54793 590 aa16.32■□□□□ 0.2
VPS29-204ENST00000548259 GSTM4Q03013 218 aa16.32■□□□□ 0.2
VPS29-204ENST00000548259 SLC9A5Q14940 896 aa16.32■□□□□ 0.2
VPS29-204ENST00000548259 NR1I3Q14994 352 aa16.32■□□□□ 0.2
VPS29-204ENST00000548259 TAF1AQ15573 450 aaPredicted RBP16.32■□□□□ 0.2
VPS29-204ENST00000548259 FAM182AQ5T1J6 154 aa16.32■□□□□ 0.2
VPS29-204ENST00000548259 LRRC38Q5VT99 294 aa16.32■□□□□ 0.2
VPS29-204ENST00000548259 CLEC17AQ6ZS10 378 aa16.32■□□□□ 0.2
VPS29-204ENST00000548259 ADGRF3Q8IZF5 1079 aa16.32■□□□□ 0.2
VPS29-204ENST00000548259 ZNF655Q8N720 491 aaPredicted RBP16.32■□□□□ 0.2
VPS29-204ENST00000548259 OR4K2Q8NGD2 314 aa16.32■□□□□ 0.2
VPS29-204ENST00000548259 TFGQ92734 400 aaPredicted RBP16.32■□□□□ 0.2
VPS29-204ENST00000548259 FKBP10Q96AY3 582 aa16.32■□□□□ 0.2
VPS29-204ENST00000548259 NAP1L5Q96NT1 182 aaPredicted RBP16.32■□□□□ 0.2
VPS29-204ENST00000548259 HGH1Q9BTY7 390 aa16.32■□□□□ 0.2
VPS29-204ENST00000548259 LHPPQ9H008 270 aa16.32■□□□□ 0.2
VPS29-204ENST00000548259 SPRTNQ9H040 489 aaPredicted RBP16.32■□□□□ 0.2
VPS29-204ENST00000548259 COG4Q9H9E3 785 aa16.32■□□□□ 0.2
VPS29-204ENST00000548259 TRHDEQ9UKU6 1024 aa16.32■□□□□ 0.2
VPS29-204ENST00000548259 PLCL2Q9UPR0 1127 aa16.32■□□□□ 0.2
VPS29-204ENST00000548259 LUC7L2Q9Y383 392 aaKnown RBP16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 94.2 ms