RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 SCGB2A2Q13296 93 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 WLSQ5T9L3 541 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 DHRS13Q6UX07 377 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 C16orf89Q6UX73 402 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 SGCDQ92629 289 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 FKBPLQ9UIM3 349 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 IFT52Q9Y366 437 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 ADAMTS4O75173 837 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 LRIG2O94898 1065 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 L1CAMP32004 1257 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 GRIA4P48058 902 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 LYPD8Q6UX82 237 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 CHERPQ8IWX8 916 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 ANKFN1Q8N957 763 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 HM13Q8TCT9 377 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 NSMCE3Q96MG7 304 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 SFXN2Q96NB2 322 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 PHF11Q9UIL8 331 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 ASTN1O14525 1302 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 NPEPPSL1A6NEC2 478 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 RCCD1A6NED2 376 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 ELOA3DA6NLF2 546 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 ARHGEF33A8MVX0 844 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 PPP1R11O60927 126 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 ACPPP15309 386 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 ATP6V0D1P61421 351 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 SLC35G1Q2M3R5 365 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 ELOA3BQ3SY89 546 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 ESCO2Q56NI9 601 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 C16orf87Q6PH81 154 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 SLC51AQ86UW1 340 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 C17orf53Q8N3J3 647 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 ELOA3Q8NG57 546 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 NELL1Q92832 810 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 CTRCQ99895 268 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 MIOSQ9NXC5 875 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 PGAP2Q9UHJ9 254 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 ZNF840PA6NDX5 716 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 IFNGP01579 166 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 GP1BBP13224 206 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 CCNCP24863 283 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 C19orf57Q0VDD7 668 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 ZNF267Q14586 743 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 FAM187BQ17R55 369 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 TYW3Q6IPR3 259 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 GRAMD2AQ8IUY3 354 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 XAGE5Q8WWM1 108 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 ZDHHC16Q969W1 377 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 ZNF641Q96N77 438 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 OR6C1Q96RD1 312 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 FNDC11Q9BVV2 318 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 FBXW11Q9UKB1 542 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 MCTS1Q9ULC4 181 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 CORO2BQ9UQ03 480 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 ACTL7BQ9Y614 415 aa9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 MAP2P11137 1827 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-202ENST00000381753 A0A1W2PPW3 197 aa9.02□□□□□ -0.96
LIMCH1-202ENST00000381753 hCG_1807616A0A1W2PRN6 198 aa9.02□□□□□ -0.96
LIMCH1-202ENST00000381753 ZNF891A8MT65 544 aaPredicted RBP9.02□□□□□ -0.96
LIMCH1-202ENST00000381753 APOC4-APOC2K7ER74 178 aa9.02□□□□□ -0.96
LIMCH1-202ENST00000381753 ATP5HO75947 161 aa9.02□□□□□ -0.96
LIMCH1-202ENST00000381753 SNUPNO95149 360 aaKnown RBP9.02□□□□□ -0.96
LIMCH1-202ENST00000381753 GSRP00390 522 aa9.02□□□□□ -0.96
LIMCH1-202ENST00000381753 APOC2P02655 101 aa9.02□□□□□ -0.96
LIMCH1-202ENST00000381753 SNHG28P0DPA3 235 aa9.02□□□□□ -0.96
LIMCH1-202ENST00000381753 ADRB3P13945 408 aa9.02□□□□□ -0.96
LIMCH1-202ENST00000381753 PNLIPRP1P54315 467 aa9.02□□□□□ -0.96
LIMCH1-202ENST00000381753 RAB15P59190 212 aa9.02□□□□□ -0.96
LIMCH1-202ENST00000381753 ZXDAP98168 799 aa9.02□□□□□ -0.96
LIMCH1-202ENST00000381753 EPS8Q12929 822 aa9.02□□□□□ -0.96
LIMCH1-202ENST00000381753 NFATC3Q12968 1075 aa9.02□□□□□ -0.96
LIMCH1-202ENST00000381753 ENPP2Q13822 863 aa9.02□□□□□ -0.96
LIMCH1-202ENST00000381753 NCF4Q15080 339 aa9.02□□□□□ -0.96
LIMCH1-202ENST00000381753 TAF1AQ15573 450 aaPredicted RBP9.02□□□□□ -0.96
LIMCH1-202ENST00000381753 RNF111Q6ZNA4 994 aa9.02□□□□□ -0.96
LIMCH1-202ENST00000381753 PTGR2Q8N8N7 351 aaPredicted RBP9.02□□□□□ -0.96
LIMCH1-202ENST00000381753 SLC4A11Q8NBS3 891 aa9.02□□□□□ -0.96
LIMCH1-202ENST00000381753 NAA11Q9BSU3 229 aaPredicted RBP9.02□□□□□ -0.96
LIMCH1-202ENST00000381753 KLHL4Q9C0H6 718 aa9.02□□□□□ -0.96
LIMCH1-202ENST00000381753 LOXL2Q9Y4K0 774 aa9.02□□□□□ -0.96
LIMCH1-202ENST00000381753 IFT172Q9UG01 1749 aa9.02□□□□□ -0.96
LIMCH1-202ENST00000381753 CCDC154A6NI56 674 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 IPO13O94829 963 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 AGTP01019 485 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 SAGP10523 405 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 HNF1AP20823 631 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 SLC6A11P48066 632 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 TXNDC11Q6PKC3 985 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 MYRIPQ8NFW9 859 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 SEMA4DQ92854 862 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 LENG8Q96PV6 779 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 SLC6A16Q9GZN6 736 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 RNF32Q9H0A6 362 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 ITM2CQ9NQX7 267 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 ZDHHC3Q9NYG2 299 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 SOX13Q9UN79 622 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 C4BP0C0L5 1744 aa9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 ATP1B2P14415 290 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-202ENST00000381753 MPIP34949 423 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 394.3 ms