RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 FIG4Q92562 907 aa10.28□□□□□ -0.76
LIG1-220ENST00000601091 PSMG2Q969U7 264 aa10.28□□□□□ -0.76
LIG1-220ENST00000601091 VPS33AQ96AX1 596 aa10.28□□□□□ -0.76
LIG1-220ENST00000601091 HMCESQ96FZ2 354 aa10.28□□□□□ -0.76
LIG1-220ENST00000601091 ZPBPQ9BS86 351 aa10.28□□□□□ -0.76
LIG1-220ENST00000601091 UGT2B28Q9BY64 529 aa10.28□□□□□ -0.76
LIG1-220ENST00000601091 ZCCHC2Q9C0B9 1178 aaKnown RBP10.28□□□□□ -0.76
LIG1-220ENST00000601091 R3HDMLQ9H3Y0 253 aa10.28□□□□□ -0.76
LIG1-220ENST00000601091 SAV1Q9H4B6 383 aaPredicted RBP10.28□□□□□ -0.76
LIG1-220ENST00000601091 EHD3Q9NZN3 535 aa10.28□□□□□ -0.76
LIG1-220ENST00000601091 DUSP12Q9UNI6 340 aa10.28□□□□□ -0.76
LIG1-220ENST00000601091 IFT52Q9Y366 437 aa10.28□□□□□ -0.76
LIG1-220ENST00000601091 MANSC4A6NHS7 340 aaPredicted RBP10.27□□□□□ -0.76
LIG1-220ENST00000601091 SLC22A3O75751 556 aa10.27□□□□□ -0.76
LIG1-220ENST00000601091 IFI30P13284 250 aa10.27□□□□□ -0.76
LIG1-220ENST00000601091 ZNF7P17097 686 aaPredicted RBP10.27□□□□□ -0.76
LIG1-220ENST00000601091 ATP5C1P36542 298 aaKnown RBP10.27□□□□□ -0.76
LIG1-220ENST00000601091 RHDQ02161 417 aa10.27□□□□□ -0.76
LIG1-220ENST00000601091 ELAVL2Q12926 359 aaKnown RBP10.27□□□□□ -0.76
LIG1-220ENST00000601091 ABRQ12979 859 aa10.27□□□□□ -0.76
LIG1-220ENST00000601091 CDH18Q13634 790 aa10.27□□□□□ -0.76
LIG1-220ENST00000601091 PARP15Q460N3 678 aa10.27□□□□□ -0.76
LIG1-220ENST00000601091 TXNDC11Q6PKC3 985 aa10.27□□□□□ -0.76
LIG1-220ENST00000601091 GPRIN3Q6ZVF9 776 aa10.27□□□□□ -0.76
LIG1-220ENST00000601091 FKBP9P1Q75LS8 142 aa10.27□□□□□ -0.76
LIG1-220ENST00000601091 SPNS2Q8IVW8 549 aa10.27□□□□□ -0.76
LIG1-220ENST00000601091 CCDC36Q8IYA8 594 aa10.27□□□□□ -0.76
LIG1-220ENST00000601091 MBD2Q9UBB5 411 aa10.27□□□□□ -0.76
LIG1-220ENST00000601091 SUCOQ9UBS9 1254 aaKnown RBP10.27□□□□□ -0.76
LIG1-220ENST00000601091 LIMD1Q9UGP4 676 aa10.27□□□□□ -0.76
LIG1-220ENST00000601091 VPS28Q9UK41 221 aa10.27□□□□□ -0.76
LIG1-220ENST00000601091 PDE4DIPQ5VU43 2346 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 HMX2A2RU54 273 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 MYO1GB0I1T2 1018 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 GNB5O14775 395 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 CSF2RAP15509 400 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 LPOP22079 712 aaPredicted RBP10.27□□□□□ -0.77
LIG1-220ENST00000601091 SERPINB10P48595 397 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 STK40Q8N2I9 435 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 TXNDC5Q8NBS9 432 aaKnown RBP10.27□□□□□ -0.77
LIG1-220ENST00000601091 GPR152Q8TDT2 470 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 BRI3BPQ8WY22 251 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 FADS2P1A8MWK0 482 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 M0R3G1 203 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 H6PDO95479 791 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 CKBP12277 381 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 RAD23AP54725 363 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 CDH15P55291 814 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 DNAJB13P59910 316 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 LCP2Q13094 533 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 MAD2L1Q13257 205 aaPredicted RBP10.27□□□□□ -0.77
LIG1-220ENST00000601091 GTF2H3Q13889 308 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 GRB14Q14449 540 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 PITRM1Q5JRX3 1037 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 LIN54Q6MZP7 749 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 MAMDC4Q6UXC1 1216 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 Q6ZNX1 250 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 LRRC8DQ7L1W4 858 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 SPATA19Q7Z5L4 167 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 CBR4Q8N4T8 237 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 CPSF7Q8N684 471 aaKnown RBP10.27□□□□□ -0.77
LIG1-220ENST00000601091 C2CD4AQ8NCU7 369 aaPredicted RBP10.27□□□□□ -0.77
LIG1-220ENST00000601091 TANKQ92844 425 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 TOP1MTQ969P6 601 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 ZNF285Q96NJ3 590 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 SERINC2Q96SA4 455 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 CTRCQ99895 268 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 C1orf50Q9BV19 199 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 SCN3BQ9NY72 215 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 ZMYM5Q9UJ78 669 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 LY75O60449 1722 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 TAF1LQ8IZX4 1826 aa10.27□□□□□ -0.77
LIG1-220ENST00000601091 TRBV23OR9-2A0A075B6M9 112 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 K7EPI3 171 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 GABRDO14764 452 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 NDST3O95803 873 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 CD68P34810 354 aaPredicted RBP10.26□□□□□ -0.77
LIG1-220ENST00000601091 NUP62P37198 522 aaPredicted RBP10.26□□□□□ -0.77
LIG1-220ENST00000601091 C21orf59P57076 290 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 FKBP1BP68106 108 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 CLCQ05315 142 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 CD300CQ08708 224 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 TRAF2Q12933 501 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 CEACAM7Q14002 265 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 NOMO2Q5JPE7 1267 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 CES4AQ5XG92 561 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 FCRLBQ6BAA4 426 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 FBXL19Q6PCT2 694 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 KLHDC10Q6PID8 442 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 OR4K2Q8NGD2 314 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 EXOC2Q96KP1 924 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 POLR1BQ9H9Y6 1135 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 IL37Q9NZH6 218 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 PCDH10Q9P2E7 1040 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 LSM7Q9UK45 103 aaKnown RBP10.26□□□□□ -0.77
LIG1-220ENST00000601091 SLC27A5Q9Y2P5 690 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 KIF13BQ9NQT8 1826 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 C9JVG2 144 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 hCG_2039718K7EN88 272 aa10.26□□□□□ -0.77
LIG1-220ENST00000601091 SDHDO14521 159 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms