RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 PITPNM3Q9BZ71 974 aa16.4■□□□□ 0.22
VPS29-204ENST00000548259 UBP1Q9NZI7 540 aa16.4■□□□□ 0.22
VPS29-204ENST00000548259 C2CD3Q4AC94 2353 aa16.4■□□□□ 0.22
VPS29-204ENST00000548259 FBN2P35556 2912 aa16.39■□□□□ 0.21
VPS29-204ENST00000548259 POLEQ07864 2286 aa16.39■□□□□ 0.21
VPS29-204ENST00000548259 STX7O15400 261 aaKnown RBP16.39■□□□□ 0.21
VPS29-204ENST00000548259 OR2B3O76000 313 aa16.39■□□□□ 0.21
VPS29-204ENST00000548259 WNT3AP56704 352 aa16.39■□□□□ 0.21
VPS29-204ENST00000548259 TAS2R40P59535 323 aa16.39■□□□□ 0.21
VPS29-204ENST00000548259 BCL7AQ4VC05 210 aa16.39■□□□□ 0.21
VPS29-204ENST00000548259 FCRL6Q6DN72 434 aa16.39■□□□□ 0.21
VPS29-204ENST00000548259 SARM1Q6SZW1 724 aa16.39■□□□□ 0.21
VPS29-204ENST00000548259 CTNNBL1Q8WYA6 563 aaPredicted RBP16.39■□□□□ 0.21
VPS29-204ENST00000548259 RAPGEF5Q92565 580 aa16.39■□□□□ 0.21
VPS29-204ENST00000548259 RBM41Q96IZ5 413 aaKnown RBP16.39■□□□□ 0.21
VPS29-204ENST00000548259 LINC00615Q96LM1 132 aaPredicted RBP16.39■□□□□ 0.21
VPS29-204ENST00000548259 FERD3LQ96RJ6 166 aa16.39■□□□□ 0.21
VPS29-204ENST00000548259 UNKQ9C0B0 810 aaKnown RBP16.39■□□□□ 0.21
VPS29-204ENST00000548259 OTOGQ6ZRI0 2925 aa16.39■□□□□ 0.21
VPS29-204ENST00000548259 POLQO75417 2590 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 LOC285095A0A1B0GVY8 99 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 CFAP99D6REC4 459 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 ZG16O60844 167 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 PRAMEF1O95521 474 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 H2AFZP0C0S5 128 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 HNRNPH3P31942 346 aaKnown RBP16.38■□□□□ 0.21
VPS29-204ENST00000548259 CA5AP35218 305 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 CDC16Q13042 620 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 ZXDCQ2QGD7 858 aaPredicted RBP16.38■□□□□ 0.21
VPS29-204ENST00000548259 SIRPB2Q5JXA9 342 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 AGAP7PQ5VUJ5 663 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 B3GNTL1Q67FW5 361 aaPredicted RBP16.38■□□□□ 0.21
VPS29-204ENST00000548259 SLC9A4Q6AI14 798 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 RHBDD2Q6NTF9 364 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 SPOCD1Q6ZMY3 1216 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 H2AFVQ71UI9 128 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 SLC25A41Q8N5S1 370 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 DNAJB14Q8TBM8 379 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 HM13Q8TCT9 377 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 HEXDCQ8WVB3 486 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 CPLX3Q8WVH0 158 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 INPP5DQ92835 1189 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 RMDN2Q96LZ7 410 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 TEKT5Q96M29 485 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 AGAP4Q96P64 663 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 OLFM3Q96PB7 478 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 TRAPPC9Q96Q05 1148 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 TFB2MQ9H5Q4 396 aaKnown RBP16.38■□□□□ 0.21
VPS29-204ENST00000548259 EPS8L2Q9H6S3 715 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 VPS37BQ9H9H4 285 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 IRAK4Q9NWZ3 460 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 COPG2Q9UBF2 871 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 NOVA2Q9UNW9 492 aaKnown RBP16.38■□□□□ 0.21
VPS29-204ENST00000548259 NTNG1Q9Y2I2 539 aa16.38■□□□□ 0.21
VPS29-204ENST00000548259 A0A087X0T9 212 aa16.37■□□□□ 0.21
VPS29-204ENST00000548259 A0A1W2PQJ5 194 aa16.37■□□□□ 0.21
VPS29-204ENST00000548259 CCDC66A2RUB6 948 aa16.37■□□□□ 0.21
VPS29-204ENST00000548259 C2orf81A6NN90 581 aa16.37■□□□□ 0.21
VPS29-204ENST00000548259 AGPSO00116 658 aa16.37■□□□□ 0.21
VPS29-204ENST00000548259 GPR39O43194 453 aa16.37■□□□□ 0.21
VPS29-204ENST00000548259 FAM228BP0C875 321 aa16.37■□□□□ 0.21
VPS29-204ENST00000548259 TSFMP43897 325 aaKnown RBP16.37■□□□□ 0.21
VPS29-204ENST00000548259 NR2C2P49116 596 aa16.37■□□□□ 0.21
VPS29-204ENST00000548259 C1orf189Q5VU69 101 aa16.37■□□□□ 0.21
VPS29-204ENST00000548259 ZNF385CQ66K41 422 aaPredicted RBP16.37■□□□□ 0.21
VPS29-204ENST00000548259 FAM180AQ6UWF9 173 aa16.37■□□□□ 0.21
VPS29-204ENST00000548259 CDHR3Q6ZTQ4 885 aa16.37■□□□□ 0.21
VPS29-204ENST00000548259 AMIGO1Q86WK6 493 aa16.37■□□□□ 0.21
VPS29-204ENST00000548259 RFX6Q8HWS3 928 aa16.37■□□□□ 0.21
VPS29-204ENST00000548259 GRHL3Q8TE85 626 aa16.37■□□□□ 0.21
VPS29-204ENST00000548259 DENND1AQ8TEH3 1009 aa16.37■□□□□ 0.21
VPS29-204ENST00000548259 FAR1Q8WVX9 515 aa16.37■□□□□ 0.21
VPS29-204ENST00000548259 FSD1LQ9BXM9 530 aa16.37■□□□□ 0.21
VPS29-204ENST00000548259 MVB12BQ9H7P6 319 aa16.37■□□□□ 0.21
VPS29-204ENST00000548259 LMBRD1Q9NUN5 540 aa16.37■□□□□ 0.21
VPS29-204ENST00000548259 CSMD1Q96PZ7 3565 aa16.37■□□□□ 0.21
VPS29-204ENST00000548259 BTN3A1O00481 513 aa16.36■□□□□ 0.21
VPS29-204ENST00000548259 ZSCAN9O15535 394 aaPredicted RBP16.36■□□□□ 0.21
VPS29-204ENST00000548259 SERPINC1P01008 464 aa16.36■□□□□ 0.21
VPS29-204ENST00000548259 CBSLP0DN79 551 aa16.36■□□□□ 0.21
VPS29-204ENST00000548259 PRF1P14222 555 aa16.36■□□□□ 0.21
VPS29-204ENST00000548259 CBSP35520 551 aa16.36■□□□□ 0.21
VPS29-204ENST00000548259 ZNF169Q14929 603 aaPredicted RBP16.36■□□□□ 0.21
VPS29-204ENST00000548259 TLR1Q15399 786 aa16.36■□□□□ 0.21
VPS29-204ENST00000548259 SLC1A5Q15758 541 aa16.36■□□□□ 0.21
VPS29-204ENST00000548259 NKAIN1Q4KMZ8 207 aa16.36■□□□□ 0.21
VPS29-204ENST00000548259 TLDC1Q6P9B6 456 aa16.36■□□□□ 0.21
VPS29-204ENST00000548259 ZC3H18Q86VM9 953 aaKnown RBP16.36■□□□□ 0.21
VPS29-204ENST00000548259 C19orf47Q8N9M1 422 aaKnown RBP16.36■□□□□ 0.21
VPS29-204ENST00000548259 TFB1MQ8WVM0 346 aaKnown RBP16.36■□□□□ 0.21
VPS29-204ENST00000548259 ULK4Q96C45 1275 aa16.36■□□□□ 0.21
VPS29-204ENST00000548259 IQCDQ96DY2 449 aa16.36■□□□□ 0.21
VPS29-204ENST00000548259 NDC1Q9BTX1 674 aa16.36■□□□□ 0.21
VPS29-204ENST00000548259 KLHL25Q9H0H3 589 aa16.36■□□□□ 0.21
VPS29-204ENST00000548259 DEF6Q9H4E7 631 aa16.36■□□□□ 0.21
VPS29-204ENST00000548259 ASB8Q9H765 288 aa16.36■□□□□ 0.21
VPS29-204ENST00000548259 ACTR10Q9NZ32 417 aa16.36■□□□□ 0.21
VPS29-204ENST00000548259 KLHL8Q9P2G9 620 aaPredicted RBP16.36■□□□□ 0.21
VPS29-204ENST00000548259 APCP25054 2843 aa16.35■□□□□ 0.21
VPS29-204ENST00000548259 A0A1B0GTH6 734 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms