RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ANKRD13CQ8N6S4 541 aa7.06□□□□□ -1.28
NUP54-215ENST00000514313 NHLRC2Q8NBF2 726 aa7.06□□□□□ -1.28
NUP54-215ENST00000514313 SMRP1Q8NCR6 262 aa7.06□□□□□ -1.28
NUP54-215ENST00000514313 C9orf43Q8TAL5 461 aaPredicted RBP7.06□□□□□ -1.28
NUP54-215ENST00000514313 TRAF3IP1Q8TDR0 691 aaPredicted RBP7.06□□□□□ -1.28
NUP54-215ENST00000514313 SYN2Q92777 582 aaPredicted RBP7.06□□□□□ -1.28
NUP54-215ENST00000514313 DAZLQ92904 295 aaKnown RBP7.06□□□□□ -1.28
NUP54-215ENST00000514313 ST6GALNAC6Q969X2 333 aa7.06□□□□□ -1.28
NUP54-215ENST00000514313 DBNDD1Q9H9R9 158 aa7.06□□□□□ -1.28
NUP54-215ENST00000514313 ZNF224Q9NZL3 707 aa7.06□□□□□ -1.28
NUP54-215ENST00000514313 TBC1D7Q9P0N9 293 aa7.06□□□□□ -1.28
NUP54-215ENST00000514313 SPIN1Q9Y657 262 aaPredicted RBP7.06□□□□□ -1.28
NUP54-215ENST00000514313 LILRA5A6NI73 299 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 IFIT3O14879 490 aaKnown RBP7.05□□□□□ -1.28
NUP54-215ENST00000514313 VIMP08670 466 aaKnown RBP7.05□□□□□ -1.28
NUP54-215ENST00000514313 ITGA2P17301 1181 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 ACAT1P24752 427 aaKnown RBP7.05□□□□□ -1.28
NUP54-215ENST00000514313 PSMA3P25788 255 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 PSMC4P43686 418 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 LHX1P48742 406 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 PTENP60484 403 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 SLC20A2Q08357 652 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 COASYQ13057 564 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 NFATC4Q14934 902 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 TMEM35AQ53FP2 167 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 LBHQ53QV2 105 aaPredicted RBP7.05□□□□□ -1.28
NUP54-215ENST00000514313 TCTE1Q5JU00 501 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 MFSD12Q6NUT3 480 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 TMEM182Q6ZP80 229 aaPredicted RBP7.05□□□□□ -1.28
NUP54-215ENST00000514313 LINC00696Q6ZRV3 163 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 RAPH1Q70E73 1250 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 CHCHD4Q8N4Q1 142 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 ZNF114Q8NC26 417 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 TMEM255BQ8WV15 326 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 HEXDCQ8WVB3 486 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 TMED6Q8WW62 240 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 NSMAFQ92636 917 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 TMEM19Q96HH6 336 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 CAMK1GQ96NX5 476 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 TMPRSS5Q9H3S3 457 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 FN3KQ9H479 309 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 TMEM30AQ9NV96 361 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 OCIAD1Q9NX40 245 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 ERAP1Q9NZ08 941 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 C11orf21Q9P2W6 132 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 CDH7Q9ULB5 785 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 NFS1Q9Y697 457 aa7.05□□□□□ -1.28
NUP54-215ENST00000514313 ELOVL7A1L3X0 281 aa7.04□□□□□ -1.28
NUP54-215ENST00000514313 HYKKA2RU49 373 aa7.04□□□□□ -1.28
NUP54-215ENST00000514313 NEMP2A6NFY4 417 aa7.04□□□□□ -1.28
NUP54-215ENST00000514313 ANKRD66B4E2M5 251 aa7.04□□□□□ -1.28
NUP54-215ENST00000514313 BUD23O43709 281 aaKnown RBP7.04□□□□□ -1.28
NUP54-215ENST00000514313 CAMTA2O94983 1202 aa7.04□□□□□ -1.28
NUP54-215ENST00000514313 LDLRP01130 860 aa7.04□□□□□ -1.28
NUP54-215ENST00000514313 PGGT1BP53609 377 aa7.04□□□□□ -1.28
NUP54-215ENST00000514313 C21orf58P58505 322 aa7.04□□□□□ -1.28
NUP54-215ENST00000514313 NANOS3P60323 173 aaKnown RBP7.04□□□□□ -1.28
NUP54-215ENST00000514313 UBXN1Q04323 297 aa7.04□□□□□ -1.28
NUP54-215ENST00000514313 TWIST1Q15672 202 aa7.04□□□□□ -1.28
NUP54-215ENST00000514313 UGCGQ16739 394 aa7.04□□□□□ -1.28
NUP54-215ENST00000514313 GLRA4Q5JXX5 417 aa7.04□□□□□ -1.28
NUP54-215ENST00000514313 ZNF425Q6IV72 752 aa7.04□□□□□ -1.28
NUP54-215ENST00000514313 DPY19L2P1Q6NXN4 242 aa7.04□□□□□ -1.28
NUP54-215ENST00000514313 KLC3Q6P597 504 aa7.04□□□□□ -1.28
NUP54-215ENST00000514313 GBP6Q6ZN66 633 aa7.04□□□□□ -1.28
NUP54-215ENST00000514313 TMEM219Q86XT9 240 aa7.04□□□□□ -1.28
NUP54-215ENST00000514313 ADHFE1Q8IWW8 467 aa7.04□□□□□ -1.28
NUP54-215ENST00000514313 CLIP4Q8N3C7 705 aa7.04□□□□□ -1.28
NUP54-215ENST00000514313 CTCFLQ8NI51 663 aaPredicted RBP7.04□□□□□ -1.28
NUP54-215ENST00000514313 OXNAD1Q96HP4 312 aaPredicted RBP7.04□□□□□ -1.28
NUP54-215ENST00000514313 SPATA33Q96N06 139 aa7.04□□□□□ -1.28
NUP54-215ENST00000514313 RETREG1Q9H6L5 497 aa7.04□□□□□ -1.28
NUP54-215ENST00000514313 TCP11L1Q9NUJ3 509 aa7.04□□□□□ -1.28
NUP54-215ENST00000514313 SMARCAL1Q9NZC9 954 aa7.04□□□□□ -1.28
NUP54-215ENST00000514313 SEPT10Q9P0V9 454 aa7.04□□□□□ -1.28
NUP54-215ENST00000514313 ZCWPW2A0A1B0GU75 182 aa7.03□□□□□ -1.28
NUP54-215ENST00000514313 C5orf52A6NGY3 159 aa7.03□□□□□ -1.28
NUP54-215ENST00000514313 DNAJC9-AS1A6NH13 148 aa7.03□□□□□ -1.28
NUP54-215ENST00000514313 EIF3DO15371 548 aaKnown RBP eCLIP7.03□□□□□ -1.28
NUP54-215ENST00000514313 LDB3O75112 727 aa7.03□□□□□ -1.28
NUP54-215ENST00000514313 MOCS3O95396 460 aa7.03□□□□□ -1.28
NUP54-215ENST00000514313 GLUD1P00367 558 aa7.03□□□□□ -1.28
NUP54-215ENST00000514313 HOXC6P09630 235 aa7.03□□□□□ -1.28
NUP54-215ENST00000514313 FAM106CPP0CH98 169 aa7.03□□□□□ -1.28
NUP54-215ENST00000514313 NR4A2P43354 598 aa7.03□□□□□ -1.28
NUP54-215ENST00000514313 KCNJ1P48048 391 aa7.03□□□□□ -1.28
NUP54-215ENST00000514313 GLUD2P49448 558 aa7.03□□□□□ -1.28
NUP54-215ENST00000514313 MMP15P51511 669 aa7.03□□□□□ -1.28
NUP54-215ENST00000514313 HLFQ16534 295 aa7.03□□□□□ -1.28
NUP54-215ENST00000514313 SMU1Q2TAY7 513 aa7.03□□□□□ -1.28
NUP54-215ENST00000514313 C11orf87Q6NUJ2 197 aa7.03□□□□□ -1.28
NUP54-215ENST00000514313 GFRALQ6UXV0 394 aa7.03□□□□□ -1.28
NUP54-215ENST00000514313 ZNF517Q6ZMY9 492 aaPredicted RBP7.03□□□□□ -1.28
NUP54-215ENST00000514313 NUP54Q7Z3B4 507 aa7.03□□□□□ -1.28
NUP54-215ENST00000514313 PELI3Q8N2H9 469 aa7.03□□□□□ -1.28
NUP54-215ENST00000514313 RBMXL3Q8N7X1 1067 aaKnown RBP7.03□□□□□ -1.28
NUP54-215ENST00000514313 ZNF611Q8N823 705 aa7.03□□□□□ -1.28
NUP54-215ENST00000514313 SPC24Q8NBT2 197 aa7.03□□□□□ -1.28
NUP54-215ENST00000514313 DNASE1L2Q92874 299 aa7.03□□□□□ -1.28
NUP54-215ENST00000514313 SNX21Q969T3 373 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms