RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 SEMA5AQ13591 1074 aa17.25■□□□□ 0.35
HDDC3-201ENST00000330334 BOP1Q14137 746 aaKnown RBP17.25■□□□□ 0.35
HDDC3-201ENST00000330334 RPS6KA1Q15418 735 aa17.25■□□□□ 0.35
HDDC3-201ENST00000330334 MEI1Q5TIA1 1274 aa17.25■□□□□ 0.35
HDDC3-201ENST00000330334 DRICH1Q6PGQ1 229 aaPredicted RBP17.25■□□□□ 0.35
HDDC3-201ENST00000330334 CERS6Q6ZMG9 384 aa17.25■□□□□ 0.35
HDDC3-201ENST00000330334 NLRP9Q7RTR0 991 aa17.25■□□□□ 0.35
HDDC3-201ENST00000330334 DNAAF3Q8N9W5 541 aa17.25■□□□□ 0.35
HDDC3-201ENST00000330334 OR52K1Q8NGK4 314 aa17.25■□□□□ 0.35
HDDC3-201ENST00000330334 SEC14L1Q92503 715 aa17.25■□□□□ 0.35
HDDC3-201ENST00000330334 TFGQ92734 400 aaPredicted RBP17.25■□□□□ 0.35
HDDC3-201ENST00000330334 ZNF501Q96CX3 271 aaPredicted RBP17.25■□□□□ 0.35
HDDC3-201ENST00000330334 TTC1Q99614 292 aa17.25■□□□□ 0.35
HDDC3-201ENST00000330334 KCND1Q9NSA2 647 aa17.25■□□□□ 0.35
HDDC3-201ENST00000330334 PIH1D1Q9NWS0 290 aaKnown RBP17.25■□□□□ 0.35
HDDC3-201ENST00000330334 SMARCAL1Q9NZC9 954 aa17.25■□□□□ 0.35
HDDC3-201ENST00000330334 CCDC162PA2VCL2 907 aa17.24■□□□□ 0.35
HDDC3-201ENST00000330334 F8W8V4 182 aa17.24■□□□□ 0.35
HDDC3-201ENST00000330334 FTH1P02794 183 aa17.24■□□□□ 0.35
HDDC3-201ENST00000330334 PRSS56P0CW18 603 aa17.24■□□□□ 0.35
HDDC3-201ENST00000330334 PRDX3P30048 256 aaKnown RBP17.24■□□□□ 0.35
HDDC3-201ENST00000330334 FOXN2P32314 431 aa17.24■□□□□ 0.35
HDDC3-201ENST00000330334 CCNG2Q16589 344 aa17.24■□□□□ 0.35
HDDC3-201ENST00000330334 DEFB109BQ30KR1 87 aa17.24■□□□□ 0.35
HDDC3-201ENST00000330334 C4orf22Q6V702 233 aa17.24■□□□□ 0.35
HDDC3-201ENST00000330334 ZNF517Q6ZMY9 492 aaPredicted RBP17.24■□□□□ 0.35
HDDC3-201ENST00000330334 PRICKLE2Q7Z3G6 844 aa17.24■□□□□ 0.35
HDDC3-201ENST00000330334 OR13J1Q8NGT2 312 aa17.24■□□□□ 0.35
HDDC3-201ENST00000330334 C1orf54Q8WWF1 131 aa17.24■□□□□ 0.35
HDDC3-201ENST00000330334 TBRG4Q969Z0 631 aaKnown RBP eCLIP17.24■□□□□ 0.35
HDDC3-201ENST00000330334 LRFN5Q96NI6 719 aa17.24■□□□□ 0.35
HDDC3-201ENST00000330334 PITPNM3Q9BZ71 974 aa17.24■□□□□ 0.35
HDDC3-201ENST00000330334 CASS4Q9NQ75 786 aa17.24■□□□□ 0.35
HDDC3-201ENST00000330334 PAK5Q9P286 719 aa17.24■□□□□ 0.35
HDDC3-201ENST00000330334 DRG1Q9Y295 367 aaKnown RBP17.24■□□□□ 0.35
HDDC3-201ENST00000330334 ZKSCAN5Q9Y2L8 839 aa17.24■□□□□ 0.35
HDDC3-201ENST00000330334 MRPS18BQ9Y676 258 aaKnown RBP17.24■□□□□ 0.35
HDDC3-201ENST00000330334 SETXQ7Z333 2677 aaKnown RBP17.24■□□□□ 0.35
HDDC3-201ENST00000330334 E7EVH7 732 aa17.23■□□□□ 0.35
HDDC3-201ENST00000330334 CPNE3O75131 537 aaKnown RBP17.23■□□□□ 0.35
HDDC3-201ENST00000330334 CREG1O75629 220 aa17.23■□□□□ 0.35
HDDC3-201ENST00000330334 WISP1O95388 367 aa17.23■□□□□ 0.35
HDDC3-201ENST00000330334 IFNB1P01574 187 aa17.23■□□□□ 0.35
HDDC3-201ENST00000330334 ACADLP28330 430 aa17.23■□□□□ 0.35
HDDC3-201ENST00000330334 DNASE1L3Q13609 305 aa17.23■□□□□ 0.35
HDDC3-201ENST00000330334 CCDC38Q502W7 563 aa17.23■□□□□ 0.35
HDDC3-201ENST00000330334 TSTD2Q5T7W7 516 aa17.23■□□□□ 0.35
HDDC3-201ENST00000330334 C16orf46Q6P387 395 aa17.23■□□□□ 0.35
HDDC3-201ENST00000330334 PPP1R21Q6ZMI0 780 aa17.23■□□□□ 0.35
HDDC3-201ENST00000330334 AMIGO1Q86WK6 493 aa17.23■□□□□ 0.35
HDDC3-201ENST00000330334 TAB3Q8N5C8 712 aaPredicted RBP17.23■□□□□ 0.35
HDDC3-201ENST00000330334 OR52E1Q8NGJ3 308 aa17.23■□□□□ 0.35
HDDC3-201ENST00000330334 HDAC10Q969S8 669 aa17.23■□□□□ 0.35
HDDC3-201ENST00000330334 RAB6BQ9NRW1 208 aa17.23■□□□□ 0.35
HDDC3-201ENST00000330334 KCNMB2Q9Y691 235 aa17.23■□□□□ 0.35
HDDC3-201ENST00000330334 MYO18BQ8IUG5 2567 aa17.23■□□□□ 0.35
HDDC3-201ENST00000330334 SLC5A10A0PJK1 596 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 SLC9B1P1A6NJY1 282 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 C2orf74A8MZ97 194 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 BTN3A3O00478 584 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 MAP3K7O43318 606 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 KATNA1O75449 491 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 SCRG1O75711 98 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 NTRK1P04629 796 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 OR56A5P0C7T3 313 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 CDH3P22223 829 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 PPARGP37231 505 aaPredicted RBP17.22■□□□□ 0.35
HDDC3-201ENST00000330334 PREPP48147 710 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 LMAN1P49257 510 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 CSRP3P50461 194 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 KCNC4Q03721 635 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 SIX1Q15475 284 aaPredicted RBP17.22■□□□□ 0.35
HDDC3-201ENST00000330334 AFTPHQ6ULP2 937 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 TBC1D21Q8IYX1 336 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 ADGRF3Q8IZF5 1079 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 CCDC89Q8N998 374 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 PHC3Q8NDX5 983 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 OR4L1Q8NH43 312 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 C9orf43Q8TAL5 461 aaPredicted RBP17.22■□□□□ 0.35
HDDC3-201ENST00000330334 CT55Q8WUE5 264 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 TWSG1Q9GZX9 223 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 FANCEQ9HB96 536 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 SOHLH2Q9NX45 425 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 POLG2Q9UHN1 485 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 POLHQ9Y253 713 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 PRSS21Q9Y6M0 314 aa17.22■□□□□ 0.35
HDDC3-201ENST00000330334 PIPSLA2A3N6 862 aa17.21■□□□□ 0.35
HDDC3-201ENST00000330334 OR51F1A6NGY5 319 aa17.21■□□□□ 0.35
HDDC3-201ENST00000330334 AP3B1O00203 1094 aa17.21■□□□□ 0.35
HDDC3-201ENST00000330334 BTN3A1O00481 513 aa17.21■□□□□ 0.35
HDDC3-201ENST00000330334 APRTP07741 180 aa17.21■□□□□ 0.35
HDDC3-201ENST00000330334 PTPN4P29074 926 aa17.21■□□□□ 0.35
HDDC3-201ENST00000330334 GRIA1P42261 906 aa17.21■□□□□ 0.35
HDDC3-201ENST00000330334 ARCN1P48444 511 aaKnown RBP17.21■□□□□ 0.35
HDDC3-201ENST00000330334 ERV3-1Q14264 604 aa17.21■□□□□ 0.35
HDDC3-201ENST00000330334 GPR19Q15760 415 aa17.21■□□□□ 0.35
HDDC3-201ENST00000330334 ATP1A1-AS1Q5TC04 95 aa17.21■□□□□ 0.35
HDDC3-201ENST00000330334 IZUMO3Q5VZ72 239 aa17.21■□□□□ 0.35
HDDC3-201ENST00000330334 MICALCLQ6ZW33 695 aa17.21■□□□□ 0.35
HDDC3-201ENST00000330334 TMEM126BQ8IUX1 230 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms