RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	ELMO2	Q96JJ3	720 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	PWWP2A	Q96N64	755 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	RUNDC3B	Q96NL0	473 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	FCRL3	Q96P31	734 aa	Predicted RBP	10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	DPYSL5	Q9BPU6	564 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	HGH1	Q9BTY7	390 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	MRM3	Q9HC36	420 aa	Known RBP	10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	PPAN	Q9NQ55	473 aa	Known RBP	10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	TREX1	Q9NSU2	369 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	C20orf96	Q9NUD7	363 aa	Predicted RBP	10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	HRASLS2	Q9NWW9	162 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	SLC39A1	Q9NY26	324 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	RNF14	Q9UBS8	474 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	PCYOX1	Q9UHG3	505 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	ASF1A	Q9Y294	204 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	SNX24	Q9Y343	169 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	PCDHGA8	Q9Y5G5	932 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	HEBP2	Q9Y5Z4	205 aa		10.79	□□□□□ -0.68
DDB1-222	ENST00000543627	ZNF106	Q9H2Y7	1883 aa	Known RBP	10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	GSAP	A4D1B5	854 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	PRR19	A6NJB7	356 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	EFCAB8	A8MWE9	144 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	CCDC188	H7C350	402 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	PRMT5	O14744	637 aa	Predicted RBP	10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	FANCG	O15287	622 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	PRAMEF10	O60809	474 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	URI1	O94763	535 aa	Predicted RBP	10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	THRA	P10827	490 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	FGF3	P11487	239 aa	Predicted RBP	10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	MLN	P12872	115 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	POLR2C	P19387	275 aa	Predicted RBP	10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	CHRM3	P20309	590 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	PSMA3	P25788	255 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	CCR7	P32248	378 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	MAGEA6	P43360	314 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	ITGA8	P53708	1063 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	PPP1CA	P62136	330 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	DHX9	Q08211	1270 aa	Known RBP	10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	PRKAA1	Q13131	559 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	CTBP1	Q13363	440 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	TRA2A	Q13595	282 aa	Known RBP eCLIP	10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	CLPP	Q16740	277 aa	Predicted RBP	10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	DNAJC21	Q5F1R6	531 aa	Known RBP	10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	RNASEH2B	Q5TBB1	312 aa	Known RBP	10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	CAPRIN2	Q6IMN6	1127 aa	Known RBP	10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	NEPRO	Q6NW34	567 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	KLHL35	Q6PF15	583 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	WDR74	Q6RFH5	385 aa	Predicted RBP	10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	PACS1	Q6VY07	963 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	OOSP2	Q86WS3	158 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	ZFAND4	Q86XD8	727 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	ZNF248	Q8NDW4	579 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	LKAAEAR1	Q8TD35	194 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	KCNE4	Q8WWG9	221 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	LCN9	Q8WX39	176 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	PEX13	Q92968	403 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	STAMBPL1	Q96FJ0	436 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	CFAP36	Q96G28	342 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	ZDHHC12	Q96GR4	267 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	NRTN	Q99748	197 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	DPH5	Q9H2P9	285 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	SRMS	Q9H3Y6	488 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	EPB41L1	Q9H4G0	881 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	XKR8	Q9H6D3	395 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	UCK1	Q9HA47	277 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	ASCL3	Q9NQ33	180 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	FBXO6	Q9NRD1	293 aa	Predicted RBP	10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	IARS2	Q9NSE4	1012 aa	Known RBP	10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	OGFR	Q9NZT2	677 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	DKK4	Q9UBT3	224 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	CIDEB	Q9UHD4	219 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	GNPTG	Q9UJJ9	305 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	PLAGL1	Q9UM63	463 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	IGF2R	P11717	2491 aa		10.78	□□□□□ -0.68
DDB1-222	ENST00000543627	FAM237B	A0A1B0GVD1	139 aa		10.77	□□□□□ -0.69
DDB1-222	ENST00000543627		E5RI56	91 aa		10.77	□□□□□ -0.69
DDB1-222	ENST00000543627	LIN7A	O14910	233 aa	Predicted RBP	10.77	□□□□□ -0.69
DDB1-222	ENST00000543627	APOA4	P06727	396 aa		10.77	□□□□□ -0.69
DDB1-222	ENST00000543627	ITGA2B	P08514	1039 aa		10.77	□□□□□ -0.69
DDB1-222	ENST00000543627	NDUFS1	P28331	727 aa		10.77	□□□□□ -0.69
DDB1-222	ENST00000543627	ABCG1	P45844	678 aa		10.77	□□□□□ -0.69
DDB1-222	ENST00000543627	ERVPABLB-1	P60509	514 aa		10.77	□□□□□ -0.69
DDB1-222	ENST00000543627	SQSTM1	Q13501	440 aa		10.77	□□□□□ -0.69
DDB1-222	ENST00000543627	TMED2	Q15363	201 aa		10.77	□□□□□ -0.69
DDB1-222	ENST00000543627	LONRF1	Q17RB8	773 aa		10.77	□□□□□ -0.69
DDB1-222	ENST00000543627	COL28A1	Q2UY09	1125 aa		10.77	□□□□□ -0.69
DDB1-222	ENST00000543627	DNTTIP2	Q5QJE6	756 aa	Known RBP	10.77	□□□□□ -0.69
DDB1-222	ENST00000543627	BROX	Q5VW32	411 aa		10.77	□□□□□ -0.69
DDB1-222	ENST00000543627	ZNF470	Q6ECI4	717 aa		10.77	□□□□□ -0.69
DDB1-222	ENST00000543627	KIAA0930	Q6ICG6	404 aa	Predicted RBP	10.77	□□□□□ -0.69
DDB1-222	ENST00000543627	FBXO38	Q6PIJ6	1188 aa		10.77	□□□□□ -0.69
DDB1-222	ENST00000543627	SYDE1	Q6ZW31	735 aa	Predicted RBP	10.77	□□□□□ -0.69
DDB1-222	ENST00000543627	OTOA	Q7RTW8	1153 aa		10.77	□□□□□ -0.69
DDB1-222	ENST00000543627	ANKMY2	Q8IV38	441 aa		10.77	□□□□□ -0.69
DDB1-222	ENST00000543627	UNC5B	Q8IZJ1	945 aa		10.77	□□□□□ -0.69
DDB1-222	ENST00000543627	SPATA4	Q8NEY3	305 aa		10.77	□□□□□ -0.69
DDB1-222	ENST00000543627	OR5AR1	Q8NGP9	310 aa		10.77	□□□□□ -0.69
DDB1-222	ENST00000543627	SIGLEC10	Q96LC7	697 aa		10.77	□□□□□ -0.69
DDB1-222	ENST00000543627	C9orf72	Q96LT7	481 aa		10.77	□□□□□ -0.69
DDB1-222	ENST00000543627	TAAR9	Q96RI9	348 aa		10.77	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms