RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 MARCOQ9UEW3 520 aaPredicted RBP18.23■□□□□ 0.51
CLN3-206ENST00000360019 DNAJC16Q9Y2G8 782 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 NCOR1O75376 2440 aa18.23■□□□□ 0.51
CLN3-206ENST00000360019 MGAT4DA6NG13 374 aa18.22■□□□□ 0.51
CLN3-206ENST00000360019 GFYI3L273 518 aa18.22■□□□□ 0.51
CLN3-206ENST00000360019 CACNB4O00305 520 aaPredicted RBP18.22■□□□□ 0.51
CLN3-206ENST00000360019 LIN7AO14910 233 aaPredicted RBP18.22■□□□□ 0.51
CLN3-206ENST00000360019 MATN4O95460 622 aa18.22■□□□□ 0.51
CLN3-206ENST00000360019 HSPA4LO95757 839 aa18.22■□□□□ 0.51
CLN3-206ENST00000360019 PFN3P60673 137 aa18.22■□□□□ 0.51
CLN3-206ENST00000360019 NFE2L1Q14494 772 aa18.22■□□□□ 0.51
CLN3-206ENST00000360019 CFAP157Q5JU67 520 aa18.22■□□□□ 0.51
CLN3-206ENST00000360019 FAM83HQ6ZRV2 1179 aaPredicted RBP18.22■□□□□ 0.51
CLN3-206ENST00000360019 FRMD7Q6ZUT3 714 aa18.22■□□□□ 0.51
CLN3-206ENST00000360019 UBE2R2Q712K3 238 aaPredicted RBP18.22■□□□□ 0.51
CLN3-206ENST00000360019 OXR1Q8N573 874 aa18.22■□□□□ 0.51
CLN3-206ENST00000360019 CAMKK1Q8N5S9 505 aa18.22■□□□□ 0.51
CLN3-206ENST00000360019 PDPRQ8NCN5 879 aa18.22■□□□□ 0.51
CLN3-206ENST00000360019 RFWD2Q8NHY2 731 aa18.22■□□□□ 0.51
CLN3-206ENST00000360019 HM13Q8TCT9 377 aa18.22■□□□□ 0.51
CLN3-206ENST00000360019 RDH14Q9HBH5 336 aa18.22■□□□□ 0.51
CLN3-206ENST00000360019 DLGAP2Q9P1A6 1054 aa18.22■□□□□ 0.51
CLN3-206ENST00000360019 STX16-NPEPL1H3BU86 382 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 K7ESF4 209 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 STX16O14662 325 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 SNX2O60749 519 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 SUPT7LO94864 414 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 GUCA1CO95843 209 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 C8GP07360 202 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 HOXC4P09017 264 aaPredicted RBP18.21■□□□□ 0.51
CLN3-206ENST00000360019 KITP10721 976 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 AKT2P31751 481 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 AGTR2P50052 363 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 ALDH18A1P54886 795 aaKnown RBP18.21■□□□□ 0.51
CLN3-206ENST00000360019 KIAA1024LP59773 190 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 TPRG1LQ5T0D9 272 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 AMZ2Q86W34 360 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 ZNF781Q8N8C0 355 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 PPP4R1Q8TF05 950 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 CNDP1Q96KN2 507 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 SLC12A9Q9BXP2 914 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 FGF22Q9HCT0 170 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 MRPL40Q9NQ50 206 aaKnown RBP18.21■□□□□ 0.51
CLN3-206ENST00000360019 PNPOQ9NVS9 261 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 TMCO1Q9UM00 188 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 PDE10AQ9Y233 779 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 ASB1Q9Y576 335 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 H3BM21 787 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 PI15O43692 258 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 TROVE2P10155 538 aaKnown RBP eCLIP18.21■□□□□ 0.51
CLN3-206ENST00000360019 VCLP18206 1134 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 EEF1DP29692 281 aaKnown RBP18.21■□□□□ 0.51
CLN3-206ENST00000360019 SERPINB5P36952 375 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 CXCL12P48061 93 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 SP140Q13342 867 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 SETDB1Q15047 1291 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 MBOAT1Q6ZNC8 495 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 RAB44Q7Z6P3 723 aaPredicted RBP18.21■□□□□ 0.51
CLN3-206ENST00000360019 PIWIL2Q8TC59 973 aaKnown RBP18.21■□□□□ 0.51
CLN3-206ENST00000360019 ESAMQ96AP7 390 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 C1QTNF3Q9BXJ4 246 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 TRIM55Q9BYV6 548 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 SHCBP1LQ9BZQ2 653 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 KLHL14Q9P2G3 628 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 ZNHIT2Q9UHR6 403 aa18.21■□□□□ 0.51
CLN3-206ENST00000360019 ZBTB32Q9Y2Y4 487 aaPredicted RBP18.21■□□□□ 0.51
CLN3-206ENST00000360019 DNMT3AQ9Y6K1 912 aaPredicted RBP18.21■□□□□ 0.51
CLN3-206ENST00000360019 KMOO15229 486 aa18.2■□□□□ 0.5
CLN3-206ENST00000360019 SLC16A5O15375 505 aa18.2■□□□□ 0.5
CLN3-206ENST00000360019 RPS17P08708 135 aaKnown RBP18.2■□□□□ 0.5
CLN3-206ENST00000360019 ENO2P09104 434 aaPredicted RBP18.2■□□□□ 0.5
CLN3-206ENST00000360019 MPSTP25325 297 aa18.2■□□□□ 0.5
CLN3-206ENST00000360019 CDH13P55290 713 aa18.2■□□□□ 0.5
CLN3-206ENST00000360019 SIGLEC14Q08ET2 396 aa18.2■□□□□ 0.5
CLN3-206ENST00000360019 ABRQ12979 859 aa18.2■□□□□ 0.5
CLN3-206ENST00000360019 NFATC4Q14934 902 aa18.2■□□□□ 0.5
CLN3-206ENST00000360019 C18orf21Q32NC0 220 aaPredicted RBP18.2■□□□□ 0.5
CLN3-206ENST00000360019 CACNA2D3Q8IZS8 1091 aa18.2■□□□□ 0.5
CLN3-206ENST00000360019 C10orf82Q8WW14 230 aa18.2■□□□□ 0.5
CLN3-206ENST00000360019 NSUN5Q96P11 429 aaKnown RBP18.2■□□□□ 0.5
CLN3-206ENST00000360019 ORAI3Q9BRQ5 295 aa18.2■□□□□ 0.5
CLN3-206ENST00000360019 RMI1Q9H9A7 625 aa18.2■□□□□ 0.5
CLN3-206ENST00000360019 KCNK13Q9HB14 408 aa18.2■□□□□ 0.5
CLN3-206ENST00000360019 PARVBQ9HBI1 364 aa18.2■□□□□ 0.5
CLN3-206ENST00000360019 HAO1Q9UJM8 370 aa18.2■□□□□ 0.5
CLN3-206ENST00000360019 DCTN4Q9UJW0 460 aa18.2■□□□□ 0.5
CLN3-206ENST00000360019 SUFUQ9UMX1 484 aa18.2■□□□□ 0.5
CLN3-206ENST00000360019 INVSQ9Y283 1065 aa18.2■□□□□ 0.5
CLN3-206ENST00000360019 HS3ST3A1Q9Y663 406 aa18.2■□□□□ 0.5
CLN3-206ENST00000360019 KRT87PA6NCN2 255 aa18.19■□□□□ 0.5
CLN3-206ENST00000360019 PRAMEF26H0Y7S4 382 aa18.19■□□□□ 0.5
CLN3-206ENST00000360019 TAPBPO15533 448 aa18.19■□□□□ 0.5
CLN3-206ENST00000360019 PSIP1O75475 530 aaKnown RBP18.19■□□□□ 0.5
CLN3-206ENST00000360019 TSPAN8P19075 237 aa18.19■□□□□ 0.5
CLN3-206ENST00000360019 RPIAP49247 311 aa18.19■□□□□ 0.5
CLN3-206ENST00000360019 PYCR3Q53H96 274 aa18.19■□□□□ 0.5
CLN3-206ENST00000360019 FOXR1Q6PIV2 292 aa18.19■□□□□ 0.5
CLN3-206ENST00000360019 CCDC197Q8NCU1 140 aa18.19■□□□□ 0.5
CLN3-206ENST00000360019 CFAP61Q8NHU2 1237 aa18.19■□□□□ 0.5
CLN3-206ENST00000360019 RHBDF1Q96CC6 855 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms