RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 RAVER1Q8IY67 606 aaKnown RBP22.22■■□□□ 1.15
CDX1-201ENST00000231656 FAM131CQ96AQ9 280 aa22.22■■□□□ 1.15
CDX1-201ENST00000231656 C19orf60Q96EN9 201 aa22.22■■□□□ 1.15
CDX1-201ENST00000231656 SIPA1Q96FS4 1042 aa22.22■■□□□ 1.15
CDX1-201ENST00000231656 MRGPRX1Q96LB2 322 aa22.22■■□□□ 1.15
CDX1-201ENST00000231656 SCML1Q9UN30 329 aa22.22■■□□□ 1.15
CDX1-201ENST00000231656 COQ6Q9Y2Z9 468 aa22.22■■□□□ 1.15
CDX1-201ENST00000231656 DNAJC15Q9Y5T4 150 aa22.22■■□□□ 1.15
CDX1-201ENST00000231656 WNT9AO14904 365 aa22.22■■□□□ 1.15
CDX1-201ENST00000231656 MMP20O60882 483 aa22.22■■□□□ 1.15
CDX1-201ENST00000231656 C6P13671 934 aa22.22■■□□□ 1.15
CDX1-201ENST00000231656 FOXA1P55317 472 aa22.22■■□□□ 1.15
CDX1-201ENST00000231656 TGFBIQ15582 683 aa22.22■■□□□ 1.15
CDX1-201ENST00000231656 SBSNQ6UWP8 590 aa22.22■■□□□ 1.15
CDX1-201ENST00000231656 LARP4Q71RC2 724 aaKnown RBP eCLIP22.22■■□□□ 1.15
CDX1-201ENST00000231656 ADAMTSL2Q86TH1 951 aa22.22■■□□□ 1.15
CDX1-201ENST00000231656 CXorf40AQ8TE69 158 aa22.22■■□□□ 1.15
CDX1-201ENST00000231656 SPATA16Q9BXB7 569 aa22.22■■□□□ 1.15
CDX1-201ENST00000231656 FOXQ1Q9C009 403 aa22.22■■□□□ 1.15
CDX1-201ENST00000231656 CD274Q9NZQ7 290 aa22.22■■□□□ 1.15
CDX1-201ENST00000231656 IGLV3-16A0A075B6K0 115 aa22.21■■□□□ 1.15
CDX1-201ENST00000231656 A0A1B0GTL3 188 aa22.21■■□□□ 1.15
CDX1-201ENST00000231656 TCRBV21S2A2A0A5A6 115 aa22.21■■□□□ 1.15
CDX1-201ENST00000231656 CHURC1-FNTBB4DL54 471 aa22.21■■□□□ 1.15
CDX1-201ENST00000231656 TSPAN6O43657 245 aa22.21■■□□□ 1.15
CDX1-201ENST00000231656 SNX2O60749 519 aa22.21■■□□□ 1.15
CDX1-201ENST00000231656 TRIM16O95361 564 aa22.21■■□□□ 1.15
CDX1-201ENST00000231656 LMNAP02545 664 aaKnown RBP22.21■■□□□ 1.15
CDX1-201ENST00000231656 NSG1P42857 185 aa22.21■■□□□ 1.15
CDX1-201ENST00000231656 CYLC2Q14093 348 aaPredicted RBP22.21■■□□□ 1.15
CDX1-201ENST00000231656 HENMT1Q5T8I9 393 aaKnown RBP22.21■■□□□ 1.15
CDX1-201ENST00000231656 PGM2L1Q6PCE3 622 aa22.21■■□□□ 1.15
CDX1-201ENST00000231656 NRSN1Q8IZ57 195 aa22.21■■□□□ 1.15
CDX1-201ENST00000231656 ZBTB2Q8N680 514 aa22.21■■□□□ 1.15
CDX1-201ENST00000231656 GANCQ8TET4 914 aa22.21■■□□□ 1.15
CDX1-201ENST00000231656 DTD2Q96FN9 168 aa22.21■■□□□ 1.15
CDX1-201ENST00000231656 C3orf30Q96M34 536 aa22.21■■□□□ 1.15
CDX1-201ENST00000231656 RIOK2Q9BVS4 552 aaKnown RBP22.21■■□□□ 1.15
CDX1-201ENST00000231656 ABCG8Q9H221 673 aa22.21■■□□□ 1.15
CDX1-201ENST00000231656 SEMA4BQ9NPR2 832 aaPredicted RBP22.21■■□□□ 1.15
CDX1-201ENST00000231656 LATS2Q9NRM7 1088 aa22.21■■□□□ 1.15
CDX1-201ENST00000231656 DOCK9Q9BZ29 2069 aa22.21■■□□□ 1.15
CDX1-201ENST00000231656 FAM170BA6NMN3 283 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 CIB2O75838 187 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 EZRP15311 586 aaKnown RBP22.2■■□□□ 1.14
CDX1-201ENST00000231656 NDUFV2P19404 249 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 RGS4P49798 205 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 B4GALNT1Q00973 533 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 CREB5Q02930 508 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 SQLEQ14534 574 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 CYP2U1Q7Z449 544 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 FLCNQ8NFG4 579 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 DTX3LQ8TDB6 740 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 TWIST2Q8WVJ9 160 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 ULK4Q96C45 1275 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 PANX3Q96QZ0 392 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 KCNA7Q96RP8 456 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 NELL2Q99435 816 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 DCLRE1BQ9H816 532 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 MRGBPQ9NV56 204 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 TMPRSS11EQ9UL52 423 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 ASB1Q9Y576 335 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 UBDO15205 165 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 LZTS3O60299 673 aaPredicted RBP22.2■■□□□ 1.14
CDX1-201ENST00000231656 RECQL5O94762 991 aaPredicted RBP22.2■■□□□ 1.14
CDX1-201ENST00000231656 DGKAP23743 735 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 GAS6Q14393 721 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 TRMT5Q32P41 509 aaKnown RBP22.2■■□□□ 1.14
CDX1-201ENST00000231656 SYT13Q7L8C5 426 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 DEFB107AQ8IZN7 70 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 HMGCLL1Q8TB92 370 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 AP2M1Q96CW1 435 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 COPS8Q99627 209 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 ZSCAN5AQ9BUG6 496 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 SPATS2LQ9NUQ6 558 aaKnown RBP22.2■■□□□ 1.14
CDX1-201ENST00000231656 EIF2B4Q9UI10 523 aaKnown RBP22.2■■□□□ 1.14
CDX1-201ENST00000231656 MUTYHQ9UIF7 546 aa22.2■■□□□ 1.14
CDX1-201ENST00000231656 TSR3Q9UJK0 312 aaKnown RBP22.2■■□□□ 1.14
CDX1-201ENST00000231656 E2F3O00716 465 aa22.19■■□□□ 1.14
CDX1-201ENST00000231656 PIP5K1BO14986 540 aa22.19■■□□□ 1.14
CDX1-201ENST00000231656 CCNT2O60583 730 aaKnown RBP22.19■■□□□ 1.14
CDX1-201ENST00000231656 PCDH8O95206 1070 aa22.19■■□□□ 1.14
CDX1-201ENST00000231656 ACADMP11310 421 aa22.19■■□□□ 1.14
CDX1-201ENST00000231656 GABRG2P18507 467 aa22.19■■□□□ 1.14
CDX1-201ENST00000231656 PTK2BQ14289 1009 aa22.19■■□□□ 1.14
CDX1-201ENST00000231656 ZNF284Q2VY69 593 aa22.19■■□□□ 1.14
CDX1-201ENST00000231656 RIPOR1Q6ZS17 1223 aa22.19■■□□□ 1.14
CDX1-201ENST00000231656 MYO1HQ8N1T3 1032 aa22.19■■□□□ 1.14
CDX1-201ENST00000231656 TUBB1Q9H4B7 451 aa22.19■■□□□ 1.14
CDX1-201ENST00000231656 CD320Q9NPF0 282 aa22.19■■□□□ 1.14
CDX1-201ENST00000231656 UTP6Q9NYH9 597 aaKnown RBP22.19■■□□□ 1.14
CDX1-201ENST00000231656 AIM2O14862 343 aa22.18■■□□□ 1.14
CDX1-201ENST00000231656 PLRG1O43660 514 aaKnown RBP22.18■■□□□ 1.14
CDX1-201ENST00000231656 MLYCDO95822 493 aa22.18■■□□□ 1.14
CDX1-201ENST00000231656 KIAA1324Q6UXG2 1013 aaKnown RBP22.18■■□□□ 1.14
CDX1-201ENST00000231656 USP30Q70CQ3 517 aa22.18■■□□□ 1.14
CDX1-201ENST00000231656 FRA10AC1Q70Z53 315 aa22.18■■□□□ 1.14
CDX1-201ENST00000231656 SYVN1Q86TM6 617 aa22.18■■□□□ 1.14
CDX1-201ENST00000231656 GJD3Q8N144 294 aa22.18■■□□□ 1.14
CDX1-201ENST00000231656 TRAM1L1Q8N609 369 aa22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms