RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 ZCCHC14Q8WYQ9 949 aaKnown RBP12.74□□□□□ -0.37
CLK3-224ENST00000568605 TMEM159Q96B96 161 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 ZNF669Q96BR6 464 aaPredicted RBP12.74□□□□□ -0.37
CLK3-224ENST00000568605 LIN37Q96GY3 246 aaPredicted RBP12.74□□□□□ -0.37
CLK3-224ENST00000568605 KRT12Q99456 494 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 CCM2Q9BSQ5 444 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 NAT9Q9BTE0 207 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 TMEM121BQ9BXQ6 578 aaPredicted RBP12.74□□□□□ -0.37
CLK3-224ENST00000568605 CCDC86Q9H6F5 360 aaKnown RBP12.74□□□□□ -0.37
CLK3-224ENST00000568605 COG4Q9H9E3 785 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 UCK1Q9HA47 277 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 EPB41L5Q9HCM4 733 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 ENTPD2Q9Y5L3 495 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 HEBP2Q9Y5Z4 205 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 AK5Q9Y6K8 562 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 ANKRD12Q6UB98 2062 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 TRABD2BA6NFA1 517 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 C1QTNF9BB2RNN3 333 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 IFRD1O00458 451 aaPredicted RBP12.73□□□□□ -0.37
CLK3-224ENST00000568605 LIN7AO14910 233 aaPredicted RBP12.73□□□□□ -0.37
CLK3-224ENST00000568605 TTI1O43156 1089 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 AVILO75366 819 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 USP1O94782 785 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 PROS1P07225 676 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 C1QTNF9P0C862 333 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 PRSS56P0CW18 603 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 OGNP20774 298 aaKnown RBP12.73□□□□□ -0.37
CLK3-224ENST00000568605 MLLT3P42568 568 aaPredicted RBP12.73□□□□□ -0.37
CLK3-224ENST00000568605 MAGEA3P43357 314 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 OR1D5P58170 312 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 PLOD1Q02809 727 aaPredicted RBP12.73□□□□□ -0.37
CLK3-224ENST00000568605 CAMK2BQ13554 666 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 PLCL1Q15111 1095 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 C3orf38Q5JPI3 329 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 TMEM26Q6ZUK4 368 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 SDCCAG8Q86SQ7 713 aaPredicted RBP12.73□□□□□ -0.37
CLK3-224ENST00000568605 LRRC6Q86X45 466 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 PDIK1LQ8N165 341 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 CLDN19Q8N6F1 224 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 SPATA4Q8NEY3 305 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 WDR36Q8NI36 951 aaKnown RBP12.73□□□□□ -0.37
CLK3-224ENST00000568605 ELMO1Q92556 727 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 MFSD3Q96ES6 412 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 STAMBPL1Q96FJ0 436 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 CNTNAP3BQ96NU0 1288 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 CNTNAP3Q9BZ76 1288 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 IMP3Q9NV31 184 aaKnown RBP12.73□□□□□ -0.37
CLK3-224ENST00000568605 DKK4Q9UBT3 224 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 GNPTGQ9UJJ9 305 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 PSMD13Q9UNM6 376 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 PCDHB1Q9Y5F3 818 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 MAD1L1Q9Y6D9 718 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 RPS6KL1Q9Y6S9 549 aa12.73□□□□□ -0.37
CLK3-224ENST00000568605 UBA6A0AVT1 1052 aaPredicted RBP12.72□□□□□ -0.37
CLK3-224ENST00000568605 FAM187AA6NFU0 413 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 OR52A4PA6NMU1 304 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 EFCAB8A8MWE9 144 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 PRMT5O14744 637 aaPredicted RBP12.72□□□□□ -0.37
CLK3-224ENST00000568605 SGTAO43765 313 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 NDUFS3O75489 264 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 VAPBO95292 243 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 TTC4O95801 387 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 POLBP06746 335 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 MTHFD1P11586 935 aaKnown RBP12.72□□□□□ -0.37
CLK3-224ENST00000568605 BRAFP15056 766 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 PGAM1P18669 254 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 NDUFS1P28331 727 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 MAPK9P45984 424 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 PDX1P52945 283 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 GABREP78334 506 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 CALCOCO2Q13137 446 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 TRA2AQ13595 282 aaKnown RBP eCLIP12.72□□□□□ -0.37
CLK3-224ENST00000568605 THOC5Q13769 683 aaKnown RBP12.72□□□□□ -0.37
CLK3-224ENST00000568605 BOP1Q14137 746 aaKnown RBP12.72□□□□□ -0.37
CLK3-224ENST00000568605 RTP5Q14D33 572 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 TMED2Q15363 201 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 RPE65Q16518 533 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 KCTD19Q17RG1 926 aaPredicted RBP12.72□□□□□ -0.37
CLK3-224ENST00000568605 PHF19Q5T6S3 580 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 KLHL35Q6PF15 583 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 FAM83HQ6ZRV2 1179 aaPredicted RBP12.72□□□□□ -0.37
CLK3-224ENST00000568605 ZNF761Q86XN6 746 aaPredicted RBP12.72□□□□□ -0.37
CLK3-224ENST00000568605 MARCH9Q86YJ5 346 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 LMNTD2Q8IXW0 634 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 CFAP206Q8IYR0 622 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 OR4D9Q8NGE8 314 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 CALML6Q8TD86 181 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 ATXN7L3BQ96GX2 97 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 C12orf66Q96MD2 445 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 PANX3Q96QZ0 392 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 TCF12Q99081 682 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 CMKLR1Q99788 373 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 TRIM51Q9BSJ1 452 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 FOXP3Q9BZS1 431 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 WWP1Q9H0M0 922 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 RAB17Q9H0T7 212 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 POLR1BQ9H9Y6 1135 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 RDH14Q9HBH5 336 aa12.72□□□□□ -0.37
CLK3-224ENST00000568605 ZNF624Q9P2J8 865 aaPredicted RBP12.72□□□□□ -0.37
CLK3-224ENST00000568605 ATXN7L1Q9ULK2 861 aaPredicted RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 97.2 ms