RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	ZNF438	Q7Z4V0	828 aa		10.83	□□□□□ -0.68
DDB1-222	ENST00000543627	PROSER1	Q86XN7	944 aa		10.83	□□□□□ -0.68
DDB1-222	ENST00000543627	FAM129C	Q86XR2	697 aa		10.83	□□□□□ -0.68
DDB1-222	ENST00000543627	CREG2	Q8IUH2	290 aa		10.83	□□□□□ -0.68
DDB1-222	ENST00000543627	CACTIN-AS1	Q8N1I8	211 aa		10.83	□□□□□ -0.68
DDB1-222	ENST00000543627	MPP5	Q8N3R9	675 aa		10.83	□□□□□ -0.68
DDB1-222	ENST00000543627	SPDYE1	Q8NFV5	336 aa	Predicted RBP	10.83	□□□□□ -0.68
DDB1-222	ENST00000543627	OR2L2	Q8NH16	312 aa		10.83	□□□□□ -0.68
DDB1-222	ENST00000543627	ELMO1	Q92556	727 aa		10.83	□□□□□ -0.68
DDB1-222	ENST00000543627	MFSD3	Q96ES6	412 aa		10.83	□□□□□ -0.68
DDB1-222	ENST00000543627	TGM7	Q96PF1	710 aa		10.83	□□□□□ -0.68
DDB1-222	ENST00000543627	FERD3L	Q96RJ6	166 aa		10.83	□□□□□ -0.68
DDB1-222	ENST00000543627	INSM2	Q96T92	566 aa	Predicted RBP	10.83	□□□□□ -0.68
DDB1-222	ENST00000543627	CMKLR1	Q99788	373 aa		10.83	□□□□□ -0.68
DDB1-222	ENST00000543627	TRIM31	Q9BZY9	425 aa		10.83	□□□□□ -0.68
DDB1-222	ENST00000543627	VPS37B	Q9H9H4	285 aa		10.83	□□□□□ -0.68
DDB1-222	ENST00000543627	CATSPERZ	Q9NTU4	200 aa		10.83	□□□□□ -0.68
DDB1-222	ENST00000543627	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	IGHV5-10-1	A0A0J9YXX1	117 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	UBA6	A0AVT1	1052 aa	Predicted RBP	10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	SDR42E2	A6NKP2	422 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	AGAP14	A8MT82	685 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	IFRD1	O00458	451 aa	Predicted RBP	10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	PLD2	O14939	933 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	NDUFS3	O75489	264 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	RASSF9	O75901	435 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	TMEM63A	O94886	807 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	UBXN7	O94888	489 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	OR56A5	P0C7T3	313 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	CSF2RB	P32927	897 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	CSTF2	P33240	577 aa	Known RBP eCLIP	10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	NSG1	P42857	185 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	PREP	P48147	710 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	LSS	P48449	732 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	PRLHR	P49683	370 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	SEPHS1	P49903	392 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	PDX1	P52945	283 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	UBE2I	P63279	158 aa	Known RBP	10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	GPLD1	P80108	840 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	CDK16	Q00536	496 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	DR1	Q01658	176 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	CFHR1	Q03591	330 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	BOP1	Q14137	746 aa	Known RBP	10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	GPR18	Q14330	331 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	SEMA3A	Q14563	771 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	BCL7A	Q4VC05	210 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	SYTL3	Q4VX76	610 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	IZUMO3	Q5VZ72	239 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	PTRHD1	Q6GMV3	140 aa	Known RBP	10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	IRGC	Q6NXR0	463 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	TMEM71	Q6P5X7	295 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	PPIL6	Q8IXY8	311 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	LSMEM2	Q8N112	164 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	AVL9	Q8NBF6	648 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	PHC3	Q8NDX5	983 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	GPR150	Q8NGU9	434 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	ZNF592	Q92610	1267 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	FGF11	Q92914	225 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	ZNF669	Q96BR6	464 aa	Predicted RBP	10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	GRAMD1A	Q96CP6	724 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	RNF31	Q96EP0	1072 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	KRT12	Q99456	494 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	TRIM56	Q9BRZ2	755 aa	Known RBP	10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	IL1RAPL1	Q9NZN1	696 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	TSR3	Q9UJK0	312 aa	Known RBP	10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	ACSL5	Q9ULC5	683 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	ACACB	O00763	2458 aa		10.82	□□□□□ -0.68
DDB1-222	ENST00000543627	WDFY3	Q8IZQ1	3526 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	EPG5	Q9HCE0	2579 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	TRBV5-4	A0A0C4DH59	114 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627		A0A1W2PNU3	283 aa	Predicted RBP	10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	EFCAB7	A8K855	629 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	IQCF5	A8MTL0	148 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	RRP8	O43159	456 aa	Known RBP	10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	TLX3	O43711	291 aa	Predicted RBP	10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	SGTA	O43765	313 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	FTH1	P02794	183 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	MTHFD1	P11586	935 aa	Known RBP	10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	CCL4	P13236	92 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	PAM	P19021	973 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	PDHA2	P29803	388 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	EIF2S3	P41091	472 aa	Known RBP	10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	ARCN1	P48444	511 aa	Known RBP	10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	LIMK2	P53671	638 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	ZFP36L1	Q07352	338 aa	Known RBP	10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	DMPK	Q09013	629 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	PRKG2	Q13237	762 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	THOC5	Q13769	683 aa	Known RBP	10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	DHX34	Q14147	1143 aa	Known RBP	10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	ITIH4	Q14624	930 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	NR1D2	Q14995	579 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	C16orf72	Q14CZ0	275 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	AARS2	Q5JTZ9	985 aa	Known RBP	10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	AGAP9	Q5VTM2	703 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	ARMC6	Q6NXE6	501 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	WASH2P	Q6VEQ5	465 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	CERS6	Q6ZMG9	384 aa		10.81	□□□□□ -0.68
DDB1-222	ENST00000543627	FAM92B	Q6ZTR7	304 aa		10.81	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 98.9 ms