RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 GULP1Q9UBP9 304 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 RNF112Q9ULX5 631 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 CYP8B1Q9UNU6 501 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 CDYLQ9Y232 598 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 LRRC72A6NJI9 287 aa18.29■□□□□ 0.52
CLN3-206ENST00000360019 UBXN8O00124 270 aa18.29■□□□□ 0.52
CLN3-206ENST00000360019 STK25O00506 426 aa18.29■□□□□ 0.52
CLN3-206ENST00000360019 ITM2AO43736 263 aa18.29■□□□□ 0.52
CLN3-206ENST00000360019 VEGFDO43915 354 aa18.29■□□□□ 0.52
CLN3-206ENST00000360019 SEMA4FO95754 770 aa18.29■□□□□ 0.52
CLN3-206ENST00000360019 CBSLP0DN79 551 aa18.29■□□□□ 0.52
CLN3-206ENST00000360019 CBSP35520 551 aa18.29■□□□□ 0.52
CLN3-206ENST00000360019 STX3Q13277 289 aa18.29■□□□□ 0.52
CLN3-206ENST00000360019 PLEKHS1Q5SXH7 462 aa18.29■□□□□ 0.52
CLN3-206ENST00000360019 TRAPPC5Q8IUR0 188 aa18.29■□□□□ 0.52
CLN3-206ENST00000360019 MYO1HQ8N1T3 1032 aa18.29■□□□□ 0.52
CLN3-206ENST00000360019 MYOCQ99972 504 aa18.29■□□□□ 0.52
CLN3-206ENST00000360019 F8W8V4 182 aa18.28■□□□□ 0.52
CLN3-206ENST00000360019 GPC4O75487 556 aa18.28■□□□□ 0.52
CLN3-206ENST00000360019 IPO13O94829 963 aaKnown RBP18.28■□□□□ 0.52
CLN3-206ENST00000360019 GRK2P25098 689 aa18.28■□□□□ 0.52
CLN3-206ENST00000360019 PRKAA2P54646 552 aa18.28■□□□□ 0.52
CLN3-206ENST00000360019 NFKB2Q00653 900 aa18.28■□□□□ 0.52
CLN3-206ENST00000360019 ZNF658BQ4V348 819 aaPredicted RBP18.28■□□□□ 0.52
CLN3-206ENST00000360019 DOK6Q6PKX4 331 aa18.28■□□□□ 0.52
CLN3-206ENST00000360019 SBSNQ6UWP8 590 aa18.28■□□□□ 0.52
CLN3-206ENST00000360019 PHF21BQ96EK2 531 aa18.28■□□□□ 0.52
CLN3-206ENST00000360019 CCM2Q9BSQ5 444 aa18.28■□□□□ 0.52
CLN3-206ENST00000360019 TPSD1Q9BZJ3 242 aa18.28■□□□□ 0.52
CLN3-206ENST00000360019 NSRP1Q9H0G5 558 aaKnown RBP18.28■□□□□ 0.52
CLN3-206ENST00000360019 FAM8A1Q9UBU6 413 aa18.28■□□□□ 0.52
CLN3-206ENST00000360019 EIF3FO00303 357 aaPredicted RBP18.28■□□□□ 0.52
CLN3-206ENST00000360019 KPNA5O15131 536 aa18.28■□□□□ 0.52
CLN3-206ENST00000360019 NUAK1O60285 661 aa18.28■□□□□ 0.52
CLN3-206ENST00000360019 LYPLA1O75608 230 aaPredicted RBP18.28■□□□□ 0.52
CLN3-206ENST00000360019 ENO3P13929 434 aaPredicted RBP18.28■□□□□ 0.52
CLN3-206ENST00000360019 HK3P52790 923 aa18.28■□□□□ 0.52
CLN3-206ENST00000360019 NAGLUP54802 743 aa18.28■□□□□ 0.52
CLN3-206ENST00000360019 DNAJB13P59910 316 aa18.28■□□□□ 0.52
CLN3-206ENST00000360019 SF3A3Q12874 501 aaKnown RBP eCLIP18.28■□□□□ 0.52
CLN3-206ENST00000360019 MTAPQ13126 283 aa18.28■□□□□ 0.52
CLN3-206ENST00000360019 GTF2H3Q13889 308 aa18.28■□□□□ 0.52
CLN3-206ENST00000360019 PPP1R3AQ16821 1122 aa18.28■□□□□ 0.52
CLN3-206ENST00000360019 PIGWQ7Z7B1 504 aa18.28■□□□□ 0.52
CLN3-206ENST00000360019 SPEM1Q8N4L4 309 aa18.28■□□□□ 0.52
CLN3-206ENST00000360019 LILRA3Q8N6C8 439 aaPredicted RBP18.28■□□□□ 0.52
CLN3-206ENST00000360019 SREK1Q8WXA9 508 aaKnown RBP18.28■□□□□ 0.52
CLN3-206ENST00000360019 TOE1Q96GM8 510 aaKnown RBP18.28■□□□□ 0.52
CLN3-206ENST00000360019 C7orf26Q96N11 449 aa18.28■□□□□ 0.52
CLN3-206ENST00000360019 TMEM237Q96Q45 408 aa18.28■□□□□ 0.52
CLN3-206ENST00000360019 THAP1Q9NVV9 213 aa18.28■□□□□ 0.52
CLN3-206ENST00000360019 NCKIPSDQ9NZQ3 722 aa18.28■□□□□ 0.52
CLN3-206ENST00000360019 ADAMTS6Q9UKP5 1117 aa18.28■□□□□ 0.52
CLN3-206ENST00000360019 CCDC189A1A4V9 331 aa18.27■□□□□ 0.52
CLN3-206ENST00000360019 CHUKO15111 745 aa18.27■□□□□ 0.52
CLN3-206ENST00000360019 LATO43561 262 aa18.27■□□□□ 0.52
CLN3-206ENST00000360019 TPBGLP0DKB5 382 aa18.27■□□□□ 0.52
CLN3-206ENST00000360019 RPS9P46781 194 aaKnown RBP18.27■□□□□ 0.52
CLN3-206ENST00000360019 SLC1A6P48664 564 aa18.27■□□□□ 0.52
CLN3-206ENST00000360019 OVGP1Q12889 678 aa18.27■□□□□ 0.52
CLN3-206ENST00000360019 CRTC3Q6UUV7 619 aa18.27■□□□□ 0.52
CLN3-206ENST00000360019 XKR5Q6UX68 686 aa18.27■□□□□ 0.52
CLN3-206ENST00000360019 C11orf96Q7Z7L8 435 aa18.27■□□□□ 0.52
CLN3-206ENST00000360019 ADAMTSL2Q86TH1 951 aa18.27■□□□□ 0.52
CLN3-206ENST00000360019 FRMD1Q8N878 549 aa18.27■□□□□ 0.52
CLN3-206ENST00000360019 ASZ1Q8WWH4 475 aa18.27■□□□□ 0.52
CLN3-206ENST00000360019 DLG3Q92796 817 aa18.27■□□□□ 0.52
CLN3-206ENST00000360019 FOXJ1Q92949 421 aa18.27■□□□□ 0.52
CLN3-206ENST00000360019 CCDC126Q96EE4 140 aa18.27■□□□□ 0.52
CLN3-206ENST00000360019 ZNF514Q96K75 400 aaPredicted RBP18.27■□□□□ 0.52
CLN3-206ENST00000360019 LINC00615Q96LM1 132 aaPredicted RBP18.27■□□□□ 0.52
CLN3-206ENST00000360019 SORT1Q99523 831 aa18.27■□□□□ 0.52
CLN3-206ENST00000360019 ELAC2Q9BQ52 826 aaKnown RBP18.27■□□□□ 0.52
CLN3-206ENST00000360019 C6orf106Q9H6K1 298 aaPredicted RBP18.27■□□□□ 0.52
CLN3-206ENST00000360019 EBF2Q9HAK2 575 aa18.27■□□□□ 0.52
CLN3-206ENST00000360019 WSB2Q9NYS7 404 aaPredicted RBP18.27■□□□□ 0.52
CLN3-206ENST00000360019 GPR34Q9UPC5 381 aa18.27■□□□□ 0.52
CLN3-206ENST00000360019 SYCE1LA8MT33 242 aa18.26■□□□□ 0.51
CLN3-206ENST00000360019 SUPT3HB4E1H0 165 aa18.26■□□□□ 0.51
CLN3-206ENST00000360019 SMIM24O75264 130 aa18.26■□□□□ 0.51
CLN3-206ENST00000360019 H2AFYO75367 372 aaKnown RBP18.26■□□□□ 0.51
CLN3-206ENST00000360019 SUPT3HO75486 399 aa18.26■□□□□ 0.51
CLN3-206ENST00000360019 SLCO2B1O94956 709 aa18.26■□□□□ 0.51
CLN3-206ENST00000360019 DCNP07585 359 aaKnown RBP18.26■□□□□ 0.51
CLN3-206ENST00000360019 MYCLP1P12525 358 aaPredicted RBP18.26■□□□□ 0.51
CLN3-206ENST00000360019 PBLDP30039 288 aaPredicted RBP18.26■□□□□ 0.51
CLN3-206ENST00000360019 PXNP49023 591 aaPredicted RBP18.26■□□□□ 0.51
CLN3-206ENST00000360019 ABCE1P61221 599 aaKnown RBP18.26■□□□□ 0.51
CLN3-206ENST00000360019 TGFBIQ15582 683 aa18.26■□□□□ 0.51
CLN3-206ENST00000360019 GPSM1Q86YR5 675 aa18.26■□□□□ 0.51
CLN3-206ENST00000360019 SLC22A9Q8IVM8 553 aa18.26■□□□□ 0.51
CLN3-206ENST00000360019 PTGR2Q8N8N7 351 aaPredicted RBP18.26■□□□□ 0.51
CLN3-206ENST00000360019 DENND6BQ8NEG7 585 aa18.26■□□□□ 0.51
CLN3-206ENST00000360019 RLN3Q8WXF3 142 aa18.26■□□□□ 0.51
CLN3-206ENST00000360019 NECAB3Q96P71 396 aaPredicted RBP18.26■□□□□ 0.51
CLN3-206ENST00000360019 PHPT1Q9NRX4 125 aaPredicted RBP18.26■□□□□ 0.51
CLN3-206ENST00000360019 CA5BQ9Y2D0 317 aa18.26■□□□□ 0.51
CLN3-206ENST00000360019 SIT1Q9Y3P8 196 aa18.26■□□□□ 0.51
CLN3-206ENST00000360019 PRKAB1Q9Y478 270 aa18.26■□□□□ 0.51
CLN3-206ENST00000360019 SLC5A10A0PJK1 596 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms