RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 LAMA1P25391 3075 aa14.74□□□□□ -0.05
NUP54-213ENST00000513352 RIF1Q5UIP0 2472 aaKnown RBP14.73□□□□□ -0.05
NUP54-213ENST00000513352 C4orf47A7E2U8 309 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 CXorf49A8MYA2 514 aaPredicted RBP14.73□□□□□ -0.05
NUP54-213ENST00000513352 E5RI56 91 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 GDF9O60383 454 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 SNX2O60749 519 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 POP7O75817 140 aaKnown RBP14.73□□□□□ -0.05
NUP54-213ENST00000513352 HAUS5O94927 633 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 TRIM16O95361 564 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 TGM1P22735 817 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 CD151P48509 253 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 LRP8Q14114 963 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 UAP1Q16222 522 aaPredicted RBP14.73□□□□□ -0.05
NUP54-213ENST00000513352 DEFB133Q30KQ1 61 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 KBTBD12Q3ZCT8 623 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 SYTL3Q4VX76 610 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 CNSTQ6PJW8 725 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 KIAA0408Q6ZU52 694 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 STRA8Q7Z7C7 330 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 AMZ2Q86W34 360 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 CNTN4Q8IWV2 1026 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 KRT222Q8N1A0 295 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 GPATCH11Q8N954 259 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 FAM136AQ96C01 138 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 TIMM29Q9BSF4 260 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 CCM2Q9BSQ5 444 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 SARS2Q9NP81 518 aaKnown RBP14.73□□□□□ -0.05
NUP54-213ENST00000513352 SMYD2Q9NRG4 433 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 DNAAF2Q9NVR5 837 aaKnown RBP14.73□□□□□ -0.05
NUP54-213ENST00000513352 TRNAU1APQ9NX07 287 aaKnown RBP14.73□□□□□ -0.05
NUP54-213ENST00000513352 SLC23A2Q9UGH3 650 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 GPR34Q9UPC5 381 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 PCDHB1Q9Y5F3 818 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 PSAT1Q9Y617 370 aa14.73□□□□□ -0.05
NUP54-213ENST00000513352 A0A087WUV0 522 aaPredicted RBP14.72□□□□□ -0.05
NUP54-213ENST00000513352 LOC105378220A0A1B0GUY1 285 aaPredicted RBP14.72□□□□□ -0.05
NUP54-213ENST00000513352 NEMP2A6NFY4 417 aa14.72□□□□□ -0.05
NUP54-213ENST00000513352 FAM159BA6NKW6 160 aa14.72□□□□□ -0.05
NUP54-213ENST00000513352 IQCF5A8MTL0 148 aa14.72□□□□□ -0.05
NUP54-213ENST00000513352 CDX4O14627 284 aaPredicted RBP14.72□□□□□ -0.05
NUP54-213ENST00000513352 RIPK2O43353 540 aa14.72□□□□□ -0.05
NUP54-213ENST00000513352 ESR1P03372 595 aa14.72□□□□□ -0.05
NUP54-213ENST00000513352 TUBBP07437 444 aa14.72□□□□□ -0.05
NUP54-213ENST00000513352 ALPPL2P10696 532 aa14.72□□□□□ -0.05
NUP54-213ENST00000513352 RPS3P23396 243 aaKnown RBP eCLIP14.72□□□□□ -0.05
NUP54-213ENST00000513352 BOP1Q14137 746 aaKnown RBP14.72□□□□□ -0.05
NUP54-213ENST00000513352 SUZ12Q15022 739 aaKnown RBP14.72□□□□□ -0.05
NUP54-213ENST00000513352 BRD3Q15059 726 aa14.72□□□□□ -0.05
NUP54-213ENST00000513352 SEPT7Q16181 437 aaKnown RBP14.72□□□□□ -0.05
NUP54-213ENST00000513352 INAVAQ3KP66 663 aa14.72□□□□□ -0.05
NUP54-213ENST00000513352 MAP9Q49MG5 647 aa14.72□□□□□ -0.05
NUP54-213ENST00000513352 ZNF449Q6P9G9 518 aa14.72□□□□□ -0.05
NUP54-213ENST00000513352 SLC26A11Q86WA9 606 aa14.72□□□□□ -0.05
NUP54-213ENST00000513352 FAM46DQ8NEK8 389 aa14.72□□□□□ -0.05
NUP54-213ENST00000513352 SCG3Q8WXD2 468 aaKnown RBP14.72□□□□□ -0.05
NUP54-213ENST00000513352 ELMO1Q92556 727 aa14.72□□□□□ -0.05
NUP54-213ENST00000513352 FAM122AQ96E09 287 aa14.72□□□□□ -0.05
NUP54-213ENST00000513352 CYTH2Q99418 400 aa14.72□□□□□ -0.05
NUP54-213ENST00000513352 NDNQ99608 321 aa14.72□□□□□ -0.05
NUP54-213ENST00000513352 P2RY12Q9H244 342 aa14.72□□□□□ -0.05
NUP54-213ENST00000513352 SIRPGQ9P1W8 387 aa14.72□□□□□ -0.05
NUP54-213ENST00000513352 ARHGEF17Q96PE2 2063 aaPredicted RBP14.72□□□□□ -0.05
NUP54-213ENST00000513352 MGAT4DA6NG13 374 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 PDZK1P1A8MUH7 402 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 B4DGG1 531 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 H3BMM5 538 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 SGTAO43765 313 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 NIPSNAP2O75323 286 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 AHSGP02765 367 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 ZNF883P0CG24 379 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 PKMP14618 531 aaKnown RBP14.71□□□□□ -0.05
NUP54-213ENST00000513352 CHRM3P20309 590 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 LEPRP48357 1165 aaKnown RBP14.71□□□□□ -0.05
NUP54-213ENST00000513352 CSE1LP55060 971 aaKnown RBP14.71□□□□□ -0.05
NUP54-213ENST00000513352 NAB1Q13506 487 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 NFE2L1Q14494 772 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 TMED2Q15363 201 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 CTSL3PQ5NE16 218 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 STPG1Q5TH74 334 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 EMBQ6PCB8 327 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 NAPRTQ6XQN6 538 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 CYS1Q717R9 158 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 NRROSQ86YC3 692 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 OR2L2Q8NH16 312 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 HM13Q8TCT9 377 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 LKAAEAR1Q8TD35 194 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 GPBAR1Q8TDU6 330 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 SAP25Q8TEE9 199 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 AENQ8WTP8 325 aaKnown RBP14.71□□□□□ -0.05
NUP54-213ENST00000513352 SETD7Q8WTS6 366 aaKnown RBP14.71□□□□□ -0.05
NUP54-213ENST00000513352 ELMO2Q96JJ3 720 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 PANX3Q96QZ0 392 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 CPNE1Q99829 537 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 TXLNGYQ9BZA5 131 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 DPEP2Q9H4A9 486 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 TAAR2Q9P1P5 351 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 RABGEF1Q9UJ41 708 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 RAB21Q9UL25 225 aa14.71□□□□□ -0.05
NUP54-213ENST00000513352 DNMT3AQ9Y6K1 912 aaPredicted RBP14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms