RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 BTBD1Q9H0C5 482 aa18.33■□□□□ 0.53
CLN3-206ENST00000360019 OXSMQ9NWU1 459 aa18.33■□□□□ 0.53
CLN3-206ENST00000360019 USP34Q70CQ2 3546 aa18.33■□□□□ 0.52
CLN3-206ENST00000360019 NEMP2A6NFY4 417 aa18.33■□□□□ 0.52
CLN3-206ENST00000360019 CDC7O00311 574 aa18.33■□□□□ 0.52
CLN3-206ENST00000360019 DLX3O60479 287 aa18.33■□□□□ 0.52
CLN3-206ENST00000360019 MAGEC1O60732 1142 aa18.33■□□□□ 0.52
CLN3-206ENST00000360019 FAM107AO95990 144 aa18.33■□□□□ 0.52
CLN3-206ENST00000360019 AOAHP28039 575 aa18.33■□□□□ 0.52
CLN3-206ENST00000360019 PRLHRP49683 370 aa18.33■□□□□ 0.52
CLN3-206ENST00000360019 SGCGQ13326 291 aa18.33■□□□□ 0.52
CLN3-206ENST00000360019 TSNQ15631 228 aaKnown RBP18.33■□□□□ 0.52
CLN3-206ENST00000360019 TRIM42Q8IWZ5 723 aa18.33■□□□□ 0.52
CLN3-206ENST00000360019 PGBD3Q8N328 593 aa18.33■□□□□ 0.52
CLN3-206ENST00000360019 TSTD1Q8NFU3 115 aa18.33■□□□□ 0.52
CLN3-206ENST00000360019 RAB3IL1Q8TBN0 382 aa18.33■□□□□ 0.52
CLN3-206ENST00000360019 HIC2Q96JB3 615 aa18.33■□□□□ 0.52
CLN3-206ENST00000360019 HHIPQ96QV1 700 aa18.33■□□□□ 0.52
CLN3-206ENST00000360019 ATOH8Q96SQ7 321 aa18.33■□□□□ 0.52
CLN3-206ENST00000360019 OR2AG1Q9H205 316 aa18.33■□□□□ 0.52
CLN3-206ENST00000360019 TRIM39Q9HCM9 518 aa18.33■□□□□ 0.52
CLN3-206ENST00000360019 ATXN10Q9UBB4 475 aa18.33■□□□□ 0.52
CLN3-206ENST00000360019 NPEPPSL1A6NEC2 478 aa18.32■□□□□ 0.52
CLN3-206ENST00000360019 QSOX1O00391 747 aa18.32■□□□□ 0.52
CLN3-206ENST00000360019 BTN3A1O00481 513 aa18.32■□□□□ 0.52
CLN3-206ENST00000360019 CDK14O94921 469 aa18.32■□□□□ 0.52
CLN3-206ENST00000360019 IGLV3-19P01714 112 aa18.32■□□□□ 0.52
CLN3-206ENST00000360019 CDK3Q00526 305 aa18.32■□□□□ 0.52
CLN3-206ENST00000360019 INPP5AQ14642 412 aa18.32■□□□□ 0.52
CLN3-206ENST00000360019 LGR4Q9BXB1 951 aa18.32■□□□□ 0.52
CLN3-206ENST00000360019 FZD3Q9NPG1 666 aa18.32■□□□□ 0.52
CLN3-206ENST00000360019 KLHL42Q9P2K6 505 aa18.32■□□□□ 0.52
CLN3-206ENST00000360019 TSR3Q9UJK0 312 aaKnown RBP18.32■□□□□ 0.52
CLN3-206ENST00000360019 EDF1O60869 148 aaKnown RBP18.31■□□□□ 0.52
CLN3-206ENST00000360019 KERAO60938 352 aa18.31■□□□□ 0.52
CLN3-206ENST00000360019 LILRB5O75023 590 aa18.31■□□□□ 0.52
CLN3-206ENST00000360019 DGKAP23743 735 aa18.31■□□□□ 0.52
CLN3-206ENST00000360019 TEAD1P28347 426 aa18.31■□□□□ 0.52
CLN3-206ENST00000360019 TRIM23P36406 574 aa18.31■□□□□ 0.52
CLN3-206ENST00000360019 GBX1Q14549 363 aa18.31■□□□□ 0.52
CLN3-206ENST00000360019 TTLL9Q3SXZ7 439 aa18.31■□□□□ 0.52
CLN3-206ENST00000360019 ATG16L1Q676U5 607 aa18.31■□□□□ 0.52
CLN3-206ENST00000360019 CGB2Q6NT52 195 aa18.31■□□□□ 0.52
CLN3-206ENST00000360019 TMEM220Q6QAJ8 160 aa18.31■□□□□ 0.52
CLN3-206ENST00000360019 CPLX4Q7Z7G2 160 aa18.31■□□□□ 0.52
CLN3-206ENST00000360019 GJD3Q8N144 294 aa18.31■□□□□ 0.52
CLN3-206ENST00000360019 PJA1Q8NG27 643 aa18.31■□□□□ 0.52
CLN3-206ENST00000360019 OR2T34Q8NGX1 318 aa18.31■□□□□ 0.52
CLN3-206ENST00000360019 ASB2Q96Q27 587 aa18.31■□□□□ 0.52
CLN3-206ENST00000360019 TEX101Q9BY14 249 aa18.31■□□□□ 0.52
CLN3-206ENST00000360019 PITPNM3Q9BZ71 974 aa18.31■□□□□ 0.52
CLN3-206ENST00000360019 ZCCHC2Q9C0B9 1178 aaKnown RBP18.31■□□□□ 0.52
CLN3-206ENST00000360019 C20orf27Q9GZN8 174 aa18.31■□□□□ 0.52
CLN3-206ENST00000360019 ZNF395Q9H8N7 513 aaPredicted RBP18.31■□□□□ 0.52
CLN3-206ENST00000360019 SGK2Q9HBY8 427 aa18.31■□□□□ 0.52
CLN3-206ENST00000360019 TMEM202A6NGA9 273 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 A8MT66 165 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 C10orf142B7Z368 130 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 SLC31A1O15431 190 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 TRIM13O60858 407 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 SNNO75324 88 aaPredicted RBP18.3■□□□□ 0.52
CLN3-206ENST00000360019 FTH1P02794 183 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 SERPINE1P05121 402 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 MTHFD2P13995 350 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 ATP5F1P24539 256 aaPredicted RBP18.3■□□□□ 0.52
CLN3-206ENST00000360019 IGFALSP35858 605 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 RGS4P49798 205 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 LIPMQ5VYY2 423 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 ATG14Q6ZNE5 492 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 TRIM69Q86WT6 500 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 PPP1R14CQ8TAE6 165 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 STAG3L4Q8TBR4 150 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 ZNF473Q8WTR7 871 aaKnown RBP18.3■□□□□ 0.52
CLN3-206ENST00000360019 CLDN23Q96B33 292 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 TSSK1BQ9BXA7 367 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 EPHX3Q9H6B9 360 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 WDR26Q9H7D7 661 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 TMEM98Q9Y2Y6 226 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 OR1A2Q9Y585 309 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 PCYT1BQ9Y5K3 369 aaPredicted RBP18.3■□□□□ 0.52
CLN3-206ENST00000360019 DNAH14Q0VDD8 3507 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 NDUFAB1O14561 156 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 ZNF8P17098 575 aaPredicted RBP18.3■□□□□ 0.52
CLN3-206ENST00000360019 ARRB2P32121 409 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 OCRLQ01968 901 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 HSPA14Q0VDF9 509 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 BOP1Q14137 746 aaKnown RBP18.3■□□□□ 0.52
CLN3-206ENST00000360019 BCL7AQ4VC05 210 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 CYHR1Q6ZMK1 362 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 VRK3Q8IV63 474 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 ZNF547Q8IVP9 402 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 ASB12Q8WXK4 309 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 ELMO1Q92556 727 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 EXT2Q93063 718 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 MOCOSQ96EN8 888 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 GATA5Q9BWX5 397 aaPredicted RBP18.3■□□□□ 0.52
CLN3-206ENST00000360019 C1QTNF7Q9BXJ2 289 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 CHRDQ9H2X0 955 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 CYP4F12Q9HCS2 524 aa18.3■□□□□ 0.52
CLN3-206ENST00000360019 ACSS2Q9NR19 701 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms