RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 SATB1Q01826 763 aa22.33■■□□□ 1.17
CDX1-201ENST00000231656 STARD3Q14849 445 aa22.33■■□□□ 1.17
CDX1-201ENST00000231656 FAM46CQ5VWP2 391 aa22.33■■□□□ 1.17
CDX1-201ENST00000231656 SNX20Q7Z614 316 aa22.33■■□□□ 1.17
CDX1-201ENST00000231656 CBARPQ8N350 705 aaPredicted RBP22.33■■□□□ 1.17
CDX1-201ENST00000231656 POU5F2Q8N7G0 328 aa22.33■■□□□ 1.17
CDX1-201ENST00000231656 AGAP11Q8TF27 550 aa22.33■■□□□ 1.17
CDX1-201ENST00000231656 MCUR1Q96AQ8 359 aa22.33■■□□□ 1.17
CDX1-201ENST00000231656 DENND2DQ9H6A0 471 aaPredicted RBP22.33■■□□□ 1.17
CDX1-201ENST00000231656 DYRK4Q9NR20 520 aa22.33■■□□□ 1.17
CDX1-201ENST00000231656 APPL1Q9UKG1 709 aa22.33■■□□□ 1.17
CDX1-201ENST00000231656 CA14Q9ULX7 337 aa22.33■■□□□ 1.17
CDX1-201ENST00000231656 NDRG2Q9UN36 371 aaKnown RBP22.33■■□□□ 1.17
CDX1-201ENST00000231656 PCDHB1Q9Y5F3 818 aa22.33■■□□□ 1.17
CDX1-201ENST00000231656 TRPC5OSA6NMA1 111 aa22.33■■□□□ 1.16
CDX1-201ENST00000231656 PLK4O00444 970 aa22.33■■□□□ 1.16
CDX1-201ENST00000231656 PRMT5O14744 637 aaPredicted RBP22.33■■□□□ 1.16
CDX1-201ENST00000231656 SUPT7LO94864 414 aa22.33■■□□□ 1.16
CDX1-201ENST00000231656 DNAL1Q4LDG9 190 aa22.33■■□□□ 1.16
CDX1-201ENST00000231656 FBXL19Q6PCT2 694 aa22.33■■□□□ 1.16
CDX1-201ENST00000231656 CPSF7Q8N684 471 aaKnown RBP22.33■■□□□ 1.16
CDX1-201ENST00000231656 PBXIP1Q96AQ6 731 aa22.33■■□□□ 1.16
CDX1-201ENST00000231656 CMTM5Q96DZ9 223 aa22.33■■□□□ 1.16
CDX1-201ENST00000231656 CCDC97Q96F63 343 aaPredicted RBP22.33■■□□□ 1.16
CDX1-201ENST00000231656 PLXNB3Q9ULL4 1909 aa22.32■■□□□ 1.16
CDX1-201ENST00000231656 A0A1W2PQF6 199 aa22.32■■□□□ 1.16
CDX1-201ENST00000231656 C19orf67A6NJJ6 358 aa22.32■■□□□ 1.16
CDX1-201ENST00000231656 CDC7O00311 574 aa22.32■■□□□ 1.16
CDX1-201ENST00000231656 MAGEC1O60732 1142 aa22.32■■□□□ 1.16
CDX1-201ENST00000231656 RNASEH1O60930 286 aaKnown RBP22.32■■□□□ 1.16
CDX1-201ENST00000231656 HOXB2P14652 356 aa22.32■■□□□ 1.16
CDX1-201ENST00000231656 ZNF30P17039 623 aa22.32■■□□□ 1.16
CDX1-201ENST00000231656 GM2AP17900 193 aa22.32■■□□□ 1.16
CDX1-201ENST00000231656 RPS3P23396 243 aaKnown RBP eCLIP22.32■■□□□ 1.16
CDX1-201ENST00000231656 PGM1P36871 562 aa22.32■■□□□ 1.16
CDX1-201ENST00000231656 MMP12P39900 470 aa22.32■■□□□ 1.16
CDX1-201ENST00000231656 CLCN7P51798 805 aa22.32■■□□□ 1.16
CDX1-201ENST00000231656 MNAT1P51948 309 aa22.32■■□□□ 1.16
CDX1-201ENST00000231656 COPAP53621 1224 aa22.32■■□□□ 1.16
CDX1-201ENST00000231656 NFATC2Q13469 925 aa22.32■■□□□ 1.16
CDX1-201ENST00000231656 ARHGEF7Q14155 803 aa22.32■■□□□ 1.16
CDX1-201ENST00000231656 TSNQ15631 228 aaKnown RBP22.32■■□□□ 1.16
CDX1-201ENST00000231656 CST6Q15828 149 aa22.32■■□□□ 1.16
CDX1-201ENST00000231656 ERAP2Q6P179 960 aa22.32■■□□□ 1.16
CDX1-201ENST00000231656 ZNF852Q6ZMS4 543 aa22.32■■□□□ 1.16
CDX1-201ENST00000231656 DPPA4Q7L190 304 aa22.32■■□□□ 1.16
CDX1-201ENST00000231656 RPLP0P6Q8NHW5 317 aa22.32■■□□□ 1.16
CDX1-201ENST00000231656 FUBP1Q96AE4 644 aaKnown RBP22.32■■□□□ 1.16
CDX1-201ENST00000231656 ASB8Q9H765 288 aa22.32■■□□□ 1.16
CDX1-201ENST00000231656 CD248Q9HCU0 757 aa22.32■■□□□ 1.16
CDX1-201ENST00000231656 RNF112Q9ULX5 631 aa22.32■■□□□ 1.16
CDX1-201ENST00000231656 GLYATL1P3A0A0U1RQE8 302 aa22.31■■□□□ 1.16
CDX1-201ENST00000231656 NPEPPSL1A6NEC2 478 aa22.31■■□□□ 1.16
CDX1-201ENST00000231656 MEI4A8MW99 385 aa22.31■■□□□ 1.16
CDX1-201ENST00000231656 CHUKO15111 745 aa22.31■■□□□ 1.16
CDX1-201ENST00000231656 SPINT1O43278 529 aa22.31■■□□□ 1.16
CDX1-201ENST00000231656 C1SP09871 688 aa22.31■■□□□ 1.16
CDX1-201ENST00000231656 ADRB3P13945 408 aa22.31■■□□□ 1.16
CDX1-201ENST00000231656 CHRM3P20309 590 aa22.31■■□□□ 1.16
CDX1-201ENST00000231656 ITGALP20701 1170 aa22.31■■□□□ 1.16
CDX1-201ENST00000231656 SPAM1P38567 509 aa22.31■■□□□ 1.16
CDX1-201ENST00000231656 BTKQ06187 659 aa22.31■■□□□ 1.16
CDX1-201ENST00000231656 RALGDSQ12967 914 aa22.31■■□□□ 1.16
CDX1-201ENST00000231656 PFKFB4Q16877 469 aa22.31■■□□□ 1.16
CDX1-201ENST00000231656 ERN2Q76MJ5 926 aaKnown RBP22.31■■□□□ 1.16
CDX1-201ENST00000231656 RAB44Q7Z6P3 723 aaPredicted RBP22.31■■□□□ 1.16
CDX1-201ENST00000231656 CACUL1Q86Y37 369 aa22.31■■□□□ 1.16
CDX1-201ENST00000231656 AFAP1L2Q8N4X5 818 aa22.31■■□□□ 1.16
CDX1-201ENST00000231656 OR2T3Q8NH03 318 aa22.31■■□□□ 1.16
CDX1-201ENST00000231656 LINGO1Q96FE5 620 aa22.31■■□□□ 1.16
CDX1-201ENST00000231656 HDAC8Q9BY41 377 aa22.31■■□□□ 1.16
CDX1-201ENST00000231656 MKRN2Q9H000 416 aaKnown RBP22.31■■□□□ 1.16
CDX1-201ENST00000231656 ITM2BQ9Y287 266 aa22.31■■□□□ 1.16
CDX1-201ENST00000231656 CCDC189A1A4V9 331 aa22.3■■□□□ 1.16
CDX1-201ENST00000231656 IQCF5A8MTL0 148 aa22.3■■□□□ 1.16
CDX1-201ENST00000231656 SUPT3HB4E1H0 165 aa22.3■■□□□ 1.16
CDX1-201ENST00000231656 E5RI56 91 aa22.3■■□□□ 1.16
CDX1-201ENST00000231656 SLC22A2O15244 555 aa22.3■■□□□ 1.16
CDX1-201ENST00000231656 PEX11AO75192 247 aa22.3■■□□□ 1.16
CDX1-201ENST00000231656 SUPT3HO75486 399 aa22.3■■□□□ 1.16
CDX1-201ENST00000231656 SIX3O95343 332 aaPredicted RBP22.3■■□□□ 1.16
CDX1-201ENST00000231656 ZNF7P17097 686 aaPredicted RBP22.3■■□□□ 1.16
CDX1-201ENST00000231656 COL9A1P20849 921 aa22.3■■□□□ 1.16
CDX1-201ENST00000231656 RAP1GDS1P52306 607 aa22.3■■□□□ 1.16
CDX1-201ENST00000231656 PTPN5P54829 565 aa22.3■■□□□ 1.16
CDX1-201ENST00000231656 INHBCP55103 352 aa22.3■■□□□ 1.16
CDX1-201ENST00000231656 IL2P60568 153 aa22.3■■□□□ 1.16
CDX1-201ENST00000231656 CHRNA6Q15825 494 aa22.3■■□□□ 1.16
CDX1-201ENST00000231656 UGT3A1Q6NUS8 523 aa22.3■■□□□ 1.16
CDX1-201ENST00000231656 CPNE9Q8IYJ1 553 aa22.3■■□□□ 1.16
CDX1-201ENST00000231656 KIRREL3Q8IZU9 778 aa22.3■■□□□ 1.16
CDX1-201ENST00000231656 ARHGAP24Q8N264 748 aa22.3■■□□□ 1.16
CDX1-201ENST00000231656 EEF1AKMT1Q8WVE0 214 aa22.3■■□□□ 1.16
CDX1-201ENST00000231656 MEAF6Q9HAF1 191 aa22.3■■□□□ 1.16
CDX1-201ENST00000231656 DHRS7Q9Y394 339 aa22.3■■□□□ 1.16
CDX1-201ENST00000231656 TRAF6Q9Y4K3 522 aa22.3■■□□□ 1.16
CDX1-201ENST00000231656 LRRK1Q38SD2 2015 aa22.3■■□□□ 1.16
CDX1-201ENST00000231656 LRRC14BA6NHZ5 514 aa22.3■■□□□ 1.16
CDX1-201ENST00000231656 BTN3A1O00481 513 aa22.3■■□□□ 1.16
CDX1-201ENST00000231656 MID1O15344 667 aa22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms