RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 NIPSNAP2O75323 286 aa22.37■■□□□ 1.17
CDX1-201ENST00000231656 VPS26AO75436 327 aa22.37■■□□□ 1.17
CDX1-201ENST00000231656 PYGLP06737 847 aa22.37■■□□□ 1.17
CDX1-201ENST00000231656 MTHFD2P13995 350 aa22.37■■□□□ 1.17
CDX1-201ENST00000231656 NCF2P19878 526 aaPredicted RBP22.37■■□□□ 1.17
CDX1-201ENST00000231656 SH2D4BQ5SQS7 431 aa22.37■■□□□ 1.17
CDX1-201ENST00000231656 ZNF678Q5SXM1 525 aa22.37■■□□□ 1.17
CDX1-201ENST00000231656 PARS2Q7L3T8 475 aaKnown RBP22.37■■□□□ 1.17
CDX1-201ENST00000231656 TAS2R42Q7RTR8 314 aa22.37■■□□□ 1.17
CDX1-201ENST00000231656 TMPRSS6Q8IU80 811 aa22.37■■□□□ 1.17
CDX1-201ENST00000231656 RBM15BQ8NDT2 890 aaKnown RBP22.37■■□□□ 1.17
CDX1-201ENST00000231656 KIAA1191Q96A73 305 aa22.37■■□□□ 1.17
CDX1-201ENST00000231656 SLC30A3Q99726 388 aa22.37■■□□□ 1.17
CDX1-201ENST00000231656 GABRG3Q99928 467 aa22.37■■□□□ 1.17
CDX1-201ENST00000231656 CCDC28BQ9BUN5 200 aa22.37■■□□□ 1.17
CDX1-201ENST00000231656 EML4Q9HC35 981 aaKnown RBP22.37■■□□□ 1.17
CDX1-201ENST00000231656 B4GALT6Q9UBX8 382 aa22.37■■□□□ 1.17
CDX1-201ENST00000231656 IKZF3Q9UKT9 509 aa22.37■■□□□ 1.17
CDX1-201ENST00000231656 GOLGA8QA0A0J9YX86 632 aa22.36■■□□□ 1.17
CDX1-201ENST00000231656 GOLGA8OA6NCC3 632 aa22.36■■□□□ 1.17
CDX1-201ENST00000231656 GOLGA8NF8WBI6 632 aa22.36■■□□□ 1.17
CDX1-201ENST00000231656 TPBGLP0DKB5 382 aa22.36■■□□□ 1.17
CDX1-201ENST00000231656 ITGB7P26010 798 aa22.36■■□□□ 1.17
CDX1-201ENST00000231656 ATP6V0D1P61421 351 aa22.36■■□□□ 1.17
CDX1-201ENST00000231656 LSM12Q3MHD2 195 aaKnown RBP22.36■■□□□ 1.17
CDX1-201ENST00000231656 UNC50Q53HI1 259 aa22.36■■□□□ 1.17
CDX1-201ENST00000231656 SDE2Q6IQ49 451 aa22.36■■□□□ 1.17
CDX1-201ENST00000231656 RPS27LQ71UM5 84 aaKnown RBP22.36■■□□□ 1.17
CDX1-201ENST00000231656 MAGEC3Q8TD91 643 aa22.36■■□□□ 1.17
CDX1-201ENST00000231656 ARRDC3Q96B67 414 aa22.36■■□□□ 1.17
CDX1-201ENST00000231656 TRMOQ9BU70 441 aa22.36■■□□□ 1.17
CDX1-201ENST00000231656 PCDH12Q9NPG4 1184 aa22.36■■□□□ 1.17
CDX1-201ENST00000231656 NEMP1O14524 444 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 SYNCRIPO60506 623 aaKnown RBP22.35■■□□□ 1.17
CDX1-201ENST00000231656 KERAO60938 352 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 ADAM23O75077 832 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 KLF8O95600 359 aaPredicted RBP22.35■■□□□ 1.17
CDX1-201ENST00000231656 ESR1P03372 595 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 LHCGRP22888 699 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 EPHA3P29320 983 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 HERVK_113P63132 956 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 MRPS21P82921 87 aaKnown RBP22.35■■□□□ 1.17
CDX1-201ENST00000231656 CCINQ13939 588 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 LRRC66Q68CR7 880 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 CERS6Q6ZMG9 384 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 NKAPQ8N5F7 415 aaKnown RBP22.35■■□□□ 1.17
CDX1-201ENST00000231656 GIMAP7Q8NHV1 300 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 KCNJ9Q92806 393 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 ERVK-6Q9BXR3 956 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 MMADHCQ9H3L0 296 aaPredicted RBP22.35■■□□□ 1.17
CDX1-201ENST00000231656 TNFRSF12AQ9NP84 129 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 THEGQ9P2T0 379 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 CDYLQ9Y232 598 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 C1QTNF3-AMACRE9PGA6 284 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 UBXN8O00124 270 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 TSPAN12O95859 305 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 XPAP23025 273 aaPredicted RBP22.35■■□□□ 1.17
CDX1-201ENST00000231656 CA5AP35218 305 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 NAA25Q14CX7 972 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 MLF2Q15773 248 aaPredicted RBP22.35■■□□□ 1.17
CDX1-201ENST00000231656 PDCD2Q16342 344 aaPredicted RBP22.35■■□□□ 1.17
CDX1-201ENST00000231656 FAM151BQ6UXP7 276 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 ACAD11Q709F0 780 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 CUZD1Q86UP6 607 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 PTGR2Q8N8N7 351 aaPredicted RBP22.35■■□□□ 1.17
CDX1-201ENST00000231656 SIDT2Q8NBJ9 832 aaKnown RBP22.35■■□□□ 1.17
CDX1-201ENST00000231656 CD200R1Q8TD46 325 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 EXT2Q93063 718 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 TBRG4Q969Z0 631 aaKnown RBP eCLIP22.35■■□□□ 1.17
CDX1-201ENST00000231656 PPP1R16AQ96I34 528 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 MAELQ96JY0 434 aaKnown RBP22.35■■□□□ 1.17
CDX1-201ENST00000231656 FAR2Q96K12 515 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 PPP1R36Q96LQ0 422 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 RSPH9Q9H1X1 276 aaPredicted RBP22.35■■□□□ 1.17
CDX1-201ENST00000231656 C1orf21Q9H246 121 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 ZNF385DQ9H6B1 395 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 IL26Q9NPH9 171 aa22.35■■□□□ 1.17
CDX1-201ENST00000231656 TRMT6Q9UJA5 497 aaKnown RBP22.35■■□□□ 1.17
CDX1-201ENST00000231656 VCANP13611 3396 aa22.34■■□□□ 1.17
CDX1-201ENST00000231656 DCXO43602 365 aa22.34■■□□□ 1.17
CDX1-201ENST00000231656 PRAMEF1O95521 474 aa22.34■■□□□ 1.17
CDX1-201ENST00000231656 CYP2A6P11509 494 aaPredicted RBP22.34■■□□□ 1.17
CDX1-201ENST00000231656 BPIP17213 487 aa22.34■■□□□ 1.17
CDX1-201ENST00000231656 NFKBIAP25963 317 aa22.34■■□□□ 1.17
CDX1-201ENST00000231656 PSMD8P48556 350 aa22.34■■□□□ 1.17
CDX1-201ENST00000231656 PTSQ03393 145 aa22.34■■□□□ 1.17
CDX1-201ENST00000231656 KLF10Q13118 480 aa22.34■■□□□ 1.17
CDX1-201ENST00000231656 FBXO43Q4G163 708 aa22.34■■□□□ 1.17
CDX1-201ENST00000231656 WASHC2DQ5SRD0 308 aa22.34■■□□□ 1.17
CDX1-201ENST00000231656 KIAA1211LQ6NV74 962 aa22.34■■□□□ 1.17
CDX1-201ENST00000231656 TRMT11Q7Z4G4 463 aaKnown RBP22.34■■□□□ 1.17
CDX1-201ENST00000231656 SERPINA9Q86WD7 417 aa22.34■■□□□ 1.17
CDX1-201ENST00000231656 STAG3L4Q8TBR4 150 aa22.34■■□□□ 1.17
CDX1-201ENST00000231656 TRBV5-4A0A0C4DH59 114 aa22.33■■□□□ 1.17
CDX1-201ENST00000231656 MAN2B1O00754 1011 aa22.33■■□□□ 1.17
CDX1-201ENST00000231656 SDHDO14521 159 aa22.33■■□□□ 1.17
CDX1-201ENST00000231656 UBFD1O14562 309 aaKnown RBP22.33■■□□□ 1.17
CDX1-201ENST00000231656 PRDX6P30041 224 aa22.33■■□□□ 1.17
CDX1-201ENST00000231656 VIPR1P32241 457 aa22.33■■□□□ 1.17
CDX1-201ENST00000231656 CPOXP36551 454 aa22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms