RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 FPGTO14772 594 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 SHOXO15266 292 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 INPP4BO15327 924 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 CELF2O95319 508 aaKnown RBP10.36□□□□□ -0.75
LIG1-220ENST00000601091 ZNF23P17027 643 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 TSPAN8P19075 237 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 GRIA3P42263 894 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 RABGGTBP53611 331 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 TAS2R39P59534 338 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 MRPS6P82932 125 aaKnown RBP10.36□□□□□ -0.75
LIG1-220ENST00000601091 TWF1Q12792 350 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 PFKFB4Q16877 469 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 KIAA0408Q6ZU52 694 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 CUZD1Q86UP6 607 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 HID1Q8IV36 788 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 HDAC10Q969S8 669 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 ITPKCQ96DU7 683 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 POLR3BQ9NW08 1133 aaPredicted RBP10.36□□□□□ -0.75
LIG1-220ENST00000601091 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.36□□□□□ -0.75
LIG1-220ENST00000601091 GNEQ9Y223 722 aaKnown RBP10.36□□□□□ -0.75
LIG1-220ENST00000601091 MTF2Q9Y483 593 aaPredicted RBP10.36□□□□□ -0.75
LIG1-220ENST00000601091 PCDHGA11Q9Y5H2 935 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 SF3B1O75533 1304 aaKnown RBP eCLIP10.36□□□□□ -0.754e-6■■■■■ 81.2
LIG1-220ENST00000601091 A0A0G2JPF8 293 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 FUOMA2VDF0 154 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 C16orf96A6NNT2 1141 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 HNRNPCL3B7ZW38 293 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 PIRO00625 290 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 SLC22A2O15244 555 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 BNIP3LO60238 219 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 NRP2O60462 931 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 HNRNPCL4P0DMR1 293 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 FGFR3P22607 806 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 MAP4P27816 1152 aaKnown RBP10.36□□□□□ -0.75
LIG1-220ENST00000601091 MAXP61244 160 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 HSPA14Q0VDF9 509 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 SFT2D3Q587I9 215 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 PTRHD1Q6GMV3 140 aaKnown RBP10.36□□□□□ -0.75
LIG1-220ENST00000601091 RBM44Q6ZP01 1051 aaKnown RBP10.36□□□□□ -0.75
LIG1-220ENST00000601091 GK5Q6ZS86 529 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 TAC4Q86UU9 113 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 CAMK1DQ8IU85 385 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 CROCCP3Q8IVE0 287 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 CLYBLQ8N0X4 340 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 PLD6Q8N2A8 252 aaKnown RBP10.36□□□□□ -0.75
LIG1-220ENST00000601091 TSPAN14Q8NG11 270 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 MZB1Q8WU39 189 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 C16orf70Q9BSU1 422 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 MRPS26Q9BYN8 205 aaKnown RBP10.36□□□□□ -0.75
LIG1-220ENST00000601091 TMEM245Q9H330 911 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 RAB26Q9ULW5 256 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 TCAF1Q9Y4C2 921 aa10.36□□□□□ -0.75
LIG1-220ENST00000601091 HEMK1Q9Y5R4 338 aaPredicted RBP10.36□□□□□ -0.75
LIG1-220ENST00000601091 A0A088AWK7 358 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 ZBTB42B2RXF5 422 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 BTBD19C9JJ37 291 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 MATN3O15232 486 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 ALDH1A2O94788 518 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 PFKMP08237 780 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 AKR1A1P14550 325 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 KCNE1P15382 129 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 LBPP18428 481 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 SLC26A3P40879 764 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 SLC11A2P49281 568 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 RGS4P49798 205 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 BCAP31P51572 246 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 HUNKP57058 714 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 OCA2Q04671 838 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 SLC39A12Q504Y0 691 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 RTP2Q5QGT7 225 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 SHEQ5VZ18 495 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 FAM45BPQ6NSW5 357 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 AMIGO2Q86SJ2 522 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 PTGR2Q8N8N7 351 aaPredicted RBP10.35□□□□□ -0.75
LIG1-220ENST00000601091 OR52K2Q8NGK3 314 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 FAM45AQ8TCE6 357 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 C17orf80Q9BSJ5 609 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 POLR1EQ9GZS1 481 aaKnown RBP10.35□□□□□ -0.75
LIG1-220ENST00000601091 PLCL2Q9UPR0 1127 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 MYO18AQ92614 2054 aaKnown RBP10.35□□□□□ -0.75
LIG1-220ENST00000601091 KCNU1A8MYU2 1149 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 NUPL2O15504 423 aaKnown RBP10.35□□□□□ -0.75
LIG1-220ENST00000601091 APBB3O95704 486 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 BRCC3P46736 316 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 ZNF157P51786 506 aaPredicted RBP10.35□□□□□ -0.75
LIG1-220ENST00000601091 CLCNKBP51801 687 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 ARFIP1P53367 373 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 CDH13P55290 713 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 CTXN3Q4LDR2 81 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 TMEM198Q66K66 360 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 TRNP1Q6NT89 227 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 UGT3A1Q6NUS8 523 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 ZC3HC1Q86WB0 502 aaKnown RBP10.35□□□□□ -0.75
LIG1-220ENST00000601091 SNX31Q8N9S9 440 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 STAG3L4Q8TBR4 150 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 METTL6Q8TCB7 284 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 FAM126AQ9BYI3 521 aaPredicted RBP10.35□□□□□ -0.75
LIG1-220ENST00000601091 AKAP7Q9P0M2 348 aaPredicted RBP10.35□□□□□ -0.75
LIG1-220ENST00000601091 KCNH4Q9UQ05 1017 aa10.35□□□□□ -0.75
LIG1-220ENST00000601091 ZNF839A8K0R7 811 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 195 ms