RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 ELF2Q15723 593 aa6.77□□□□□ -1.33
SCN1A-216ENST00000637968 TRIM5Q9C035 493 aa6.77□□□□□ -1.33
SCN1A-216ENST00000637968 ACTN2P35609 894 aa6.76□□□□□ -1.33
SCN1A-216ENST00000637968 TBC1D22AQ8WUA7 517 aa6.76□□□□□ -1.33
SCN1A-216ENST00000637968 GOPCQ9HD26 462 aa6.76□□□□□ -1.33
SCN1A-216ENST00000637968 DNAJC5BQ9UF47 199 aa6.76□□□□□ -1.33
SCN1A-216ENST00000637968 GOLGA6L4A6NEF3 574 aa6.76□□□□□ -1.33
SCN1A-216ENST00000637968 GOLGA6L10A6NI86 522 aa6.76□□□□□ -1.33
SCN1A-216ENST00000637968 EIF5P55010 431 aaKnown RBP6.76□□□□□ -1.33
SCN1A-216ENST00000637968 SUGP1Q8IWZ8 645 aaKnown RBP6.76□□□□□ -1.33
SCN1A-216ENST00000637968 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.76□□□□□ -1.33
SCN1A-216ENST00000637968 CLNS1AP54105 237 aaKnown RBP6.76□□□□□ -1.33
SCN1A-216ENST00000637968 GORABQ5T7V8 394 aa6.76□□□□□ -1.33
SCN1A-216ENST00000637968 CCDC186Q7Z3E2 898 aa6.76□□□□□ -1.33
SCN1A-216ENST00000637968 TRAF1Q13077 416 aa6.75□□□□□ -1.33
SCN1A-216ENST00000637968 SWT1Q5T5J6 900 aaKnown RBP6.75□□□□□ -1.33
SCN1A-216ENST00000637968 L3MBTL2Q969R5 705 aa6.75□□□□□ -1.33
SCN1A-216ENST00000637968 KANK1Q14678 1352 aa6.75□□□□□ -1.33
SCN1A-216ENST00000637968 A0A087WUV0 522 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-216ENST00000637968 RLBP1P12271 317 aa6.75□□□□□ -1.33
SCN1A-216ENST00000637968 OAS2P29728 719 aaKnown RBP6.75□□□□□ -1.33
SCN1A-216ENST00000637968 PSMD2Q13200 908 aa6.75□□□□□ -1.33
SCN1A-216ENST00000637968 SKIDA1Q1XH10 827 aa6.75□□□□□ -1.33
SCN1A-216ENST00000637968 KIAA1524Q8TCG1 905 aa6.75□□□□□ -1.33
SCN1A-216ENST00000637968 RAD50Q92878 1312 aa6.75□□□□□ -1.33
SCN1A-216ENST00000637968 EIF3CLB5ME19 914 aaKnown RBP6.75□□□□□ -1.33
SCN1A-216ENST00000637968 GOLGA6L19H0YKK7 550 aa6.75□□□□□ -1.33
SCN1A-216ENST00000637968 IGHDP01880 384 aa6.75□□□□□ -1.33
SCN1A-216ENST00000637968 RWDD2BP57060 319 aa6.75□□□□□ -1.33
SCN1A-216ENST00000637968 SLFNL1Q499Z3 407 aa6.75□□□□□ -1.33
SCN1A-216ENST00000637968 TTC19Q6DKK2 380 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-216ENST00000637968 CCAR2Q8N163 923 aaKnown RBP6.75□□□□□ -1.33
SCN1A-216ENST00000637968 EIF3CQ99613 913 aaKnown RBP6.75□□□□□ -1.33
SCN1A-216ENST00000637968 SPINK5Q9NQ38 1064 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-216ENST00000637968 CC2D2AQ9P2K1 1620 aa6.75□□□□□ -1.33
SCN1A-216ENST00000637968 GBP2P32456 591 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-216ENST00000637968 NAA25Q14CX7 972 aa6.75□□□□□ -1.33
SCN1A-216ENST00000637968 ARMC2Q8NEN0 867 aa6.75□□□□□ -1.33
SCN1A-216ENST00000637968 LMBRD1Q9NUN5 540 aa6.75□□□□□ -1.33
SCN1A-216ENST00000637968 PTPRGP23470 1445 aa6.74□□□□□ -1.33
SCN1A-216ENST00000637968 CAND2O75155 1236 aa6.74□□□□□ -1.33
SCN1A-216ENST00000637968 EZRP15311 586 aaKnown RBP6.74□□□□□ -1.33
SCN1A-216ENST00000637968 IBSPP21815 317 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-216ENST00000637968 PDCD2Q16342 344 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-216ENST00000637968 CCDC183Q5T5S1 534 aa6.74□□□□□ -1.33
SCN1A-216ENST00000637968 CENPHQ9H3R5 247 aa6.74□□□□□ -1.33
SCN1A-216ENST00000637968 ANKRD30AQ9BXX3 1397 aa6.74□□□□□ -1.33
SCN1A-216ENST00000637968 NAIF1Q69YI7 327 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-216ENST00000637968 POTEDQ86YR6 584 aa6.74□□□□□ -1.33
SCN1A-216ENST00000637968 EXOC4Q96A65 974 aa6.74□□□□□ -1.33
SCN1A-216ENST00000637968 PDRG1Q9NUG6 133 aa6.74□□□□□ -1.33
SCN1A-216ENST00000637968 GNL3LQ9NVN8 582 aaKnown RBP6.74□□□□□ -1.33
SCN1A-216ENST00000637968 ETAA1Q9NY74 926 aa6.74□□□□□ -1.33
SCN1A-216ENST00000637968 PLEKHH2Q8IVE3 1493 aa6.74□□□□□ -1.33
SCN1A-216ENST00000637968 NEMFO60524 1076 aa6.74□□□□□ -1.33
SCN1A-216ENST00000637968 KDM4AO75164 1064 aa6.74□□□□□ -1.33
SCN1A-216ENST00000637968 CCDC192P0DO97 292 aa6.74□□□□□ -1.33
SCN1A-216ENST00000637968 KMT5BQ4FZB7 885 aa6.74□□□□□ -1.33
SCN1A-216ENST00000637968 ARHGAP29Q52LW3 1261 aa6.74□□□□□ -1.33
SCN1A-216ENST00000637968 N4BP2L2Q92802 583 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-216ENST00000637968 ERLIN1O75477 346 aa6.73□□□□□ -1.33
SCN1A-216ENST00000637968 HSP90AB4PQ58FF6 505 aa6.73□□□□□ -1.33
SCN1A-216ENST00000637968 CC2D2BQ6DHV5 1058 aa6.73□□□□□ -1.33
SCN1A-216ENST00000637968 FBXO38Q6PIJ6 1188 aa6.73□□□□□ -1.33
SCN1A-216ENST00000637968 ARFGAP3Q9NP61 516 aa6.73□□□□□ -1.33
SCN1A-216ENST00000637968 RRP7BPQ9NSQ0 103 aa6.73□□□□□ -1.33
SCN1A-216ENST00000637968 ZNF215Q9UL58 517 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-216ENST00000637968 ATP6V1DQ9Y5K8 247 aa6.73□□□□□ -1.33
SCN1A-216ENST00000637968 KLHL33A6NCF5 533 aa6.73□□□□□ -1.33
SCN1A-216ENST00000637968 CASTP20810 708 aaKnown RBP6.73□□□□□ -1.33
SCN1A-216ENST00000637968 FOXD4L6Q3SYB3 417 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-216ENST00000637968 FOXD4L3Q6VB84 417 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-216ENST00000637968 TEX11Q8IYF3 940 aa6.73□□□□□ -1.33
SCN1A-216ENST00000637968 WIZO95785 1651 aa6.73□□□□□ -1.33
SCN1A-216ENST00000637968 SHTN1A0MZ66 631 aa6.73□□□□□ -1.33
SCN1A-216ENST00000637968 ATP8B1O43520 1251 aa6.73□□□□□ -1.33
SCN1A-216ENST00000637968 HCLS1P14317 486 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-216ENST00000637968 DBN1Q16643 649 aa6.73□□□□□ -1.33
SCN1A-216ENST00000637968 TADA2BQ86TJ2 420 aa6.73□□□□□ -1.33
SCN1A-216ENST00000637968 NUP133Q8WUM0 1156 aa6.73□□□□□ -1.33
SCN1A-216ENST00000637968 MRFAP1L1Q96HT8 127 aa6.73□□□□□ -1.33
SCN1A-216ENST00000637968 CRACR2AQ9BSW2 395 aa6.73□□□□□ -1.33
SCN1A-216ENST00000637968 KIF21BO75037 1637 aa6.73□□□□□ -1.33
SCN1A-216ENST00000637968 PANK1Q8TE04 598 aa6.73□□□□□ -1.33
SCN1A-216ENST00000637968 ST7Q9NRC1 585 aa6.73□□□□□ -1.33
SCN1A-216ENST00000637968 CCDC144AA2RUR9 1427 aa6.73□□□□□ -1.33
SCN1A-216ENST00000637968 ZMYM3Q14202 1370 aa6.73□□□□□ -1.33
SCN1A-216ENST00000637968 FMN1Q68DA7 1419 aa6.72□□□□□ -1.33
SCN1A-216ENST00000637968 SMC1AQ14683 1233 aaKnown RBP6.72□□□□□ -1.33
SCN1A-216ENST00000637968 CLIP2Q9UDT6 1046 aa6.72□□□□□ -1.33
SCN1A-216ENST00000637968 ELF1P32519 619 aa6.72□□□□□ -1.33
SCN1A-216ENST00000637968 PACS2Q86VP3 889 aa6.72□□□□□ -1.33
SCN1A-216ENST00000637968 SMARCE1Q969G3 411 aa6.72□□□□□ -1.33
SCN1A-216ENST00000637968 CCDC102AQ96A19 550 aa6.72□□□□□ -1.33
SCN1A-216ENST00000637968 JPH2Q9BR39 696 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-216ENST00000637968 TMEM63CQ9P1W3 806 aa6.72□□□□□ -1.33
SCN1A-216ENST00000637968 MRC2Q9UBG0 1479 aa6.72□□□□□ -1.33
SCN1A-216ENST00000637968 EBAG9O00559 213 aa6.72□□□□□ -1.33
SCN1A-216ENST00000637968 KCNA4P22459 653 aa6.72□□□□□ -1.33
SCN1A-216ENST00000637968 CTCFLQ8NI51 663 aaPredicted RBP6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms