RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.21■□□□□ 0.67
VRK3-212ENST00000596814 GOLGA2Q08379 1002 aa19.21■□□□□ 0.67
VRK3-212ENST00000596814 AMOTQ4VCS5 1084 aa19.21■□□□□ 0.67
VRK3-212ENST00000596814 MEX3CQ5U5Q3 659 aaKnown RBP19.21■□□□□ 0.67
VRK3-212ENST00000596814 FBXO41Q8TF61 875 aa19.21■□□□□ 0.67
VRK3-212ENST00000596814 NGLY1Q96IV0 654 aa19.21■□□□□ 0.67
VRK3-212ENST00000596814 PLEKHO1Q53GL0 409 aaPredicted RBP19.2■□□□□ 0.66
VRK3-212ENST00000596814 OVOS2A0A0G2JMS6 1433 aa19.2■□□□□ 0.66
VRK3-212ENST00000596814 WDR63Q8IWG1 891 aa19.2■□□□□ 0.66
VRK3-212ENST00000596814 MAP3K5Q99683 1374 aa19.18■□□□□ 0.66
VRK3-212ENST00000596814 FNBP4Q8N3X1 1017 aaPredicted RBP19.18■□□□□ 0.66
VRK3-212ENST00000596814 CDCA7LQ96GN5 454 aa19.18■□□□□ 0.66
VRK3-212ENST00000596814 BCL9LQ86UU0 1499 aa19.17■□□□□ 0.66
VRK3-212ENST00000596814 UNC5CLQ8IV45 518 aa19.17■□□□□ 0.66
VRK3-212ENST00000596814 USP35Q9P2H5 1018 aa19.17■□□□□ 0.66
VRK3-212ENST00000596814 IL2RBP14784 551 aa19.17■□□□□ 0.66
VRK3-212ENST00000596814 ZNF530Q6P9A1 599 aaPredicted RBP19.17■□□□□ 0.66
VRK3-212ENST00000596814 LRRC37A3O60309 1634 aa19.16■□□□□ 0.66
VRK3-212ENST00000596814 GNAT3A8MTJ3 354 aa19.16■□□□□ 0.66
VRK3-212ENST00000596814 E9PSI1 815 aa19.16■□□□□ 0.66
VRK3-212ENST00000596814 RTF1Q92541 710 aaKnown RBP19.16■□□□□ 0.66
VRK3-212ENST00000596814 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.16■□□□□ 0.661e-7■■□□□ 12.1
VRK3-212ENST00000596814 SPG7Q9UQ90 795 aa19.16■□□□□ 0.66
VRK3-212ENST00000596814 DISP2A7MBM2 1401 aa19.15■□□□□ 0.66
VRK3-212ENST00000596814 CALD1Q05682 793 aaKnown RBP19.15■□□□□ 0.66
VRK3-212ENST00000596814 SLFN5Q08AF3 891 aa19.15■□□□□ 0.66
VRK3-212ENST00000596814 VIRMAQ69YN4 1812 aaKnown RBP19.15■□□□□ 0.66
VRK3-212ENST00000596814 IL16Q14005 1332 aa19.15■□□□□ 0.66
VRK3-212ENST00000596814 SPATA31A1Q5TZJ5 1347 aa19.15■□□□□ 0.66
VRK3-212ENST00000596814 HTATSF1O43719 755 aaKnown RBP19.14■□□□□ 0.66
VRK3-212ENST00000596814 C1orf141Q5JVX7 400 aa19.14■□□□□ 0.66
VRK3-212ENST00000596814 THUMPD2Q9BTF0 503 aaKnown RBP19.14■□□□□ 0.66
VRK3-212ENST00000596814 SHANK3Q9BYB0 1731 aa19.14■□□□□ 0.66
VRK3-212ENST00000596814 SPATA31A5Q5VU36 1347 aa19.14■□□□□ 0.65
VRK3-212ENST00000596814 SPATA31A7Q8IWB4 1347 aa19.14■□□□□ 0.65
VRK3-212ENST00000596814 DCTN1Q14203 1278 aa19.14■□□□□ 0.65
VRK3-212ENST00000596814 AKAP4Q5JQC9 854 aa19.14■□□□□ 0.65
VRK3-212ENST00000596814 SPINK5Q9NQ38 1064 aaPredicted RBP19.14■□□□□ 0.65
VRK3-212ENST00000596814 USP21Q9UK80 565 aa19.14■□□□□ 0.65
VRK3-212ENST00000596814 MCM10Q7L590 875 aa19.13■□□□□ 0.65
VRK3-212ENST00000596814 THRAP3Q9Y2W1 955 aaKnown RBP19.13■□□□□ 0.65
VRK3-212ENST00000596814 CCDC9Q9Y3X0 531 aaKnown RBP19.13■□□□□ 0.65
VRK3-212ENST00000596814 AFF2P51816 1311 aa19.13■□□□□ 0.65
VRK3-212ENST00000596814 VPS72Q15906 364 aa19.12■□□□□ 0.65
VRK3-212ENST00000596814 DUSP27Q5VZP5 1158 aa19.11■□□□□ 0.65
VRK3-212ENST00000596814 ADAMTS7Q9UKP4 1686 aa19.11■□□□□ 0.65
VRK3-212ENST00000596814 TRMT2AQ8IZ69 625 aaKnown RBP19.11■□□□□ 0.65
VRK3-212ENST00000596814 ZCRB1Q8TBF4 217 aaKnown RBP19.11■□□□□ 0.65
VRK3-212ENST00000596814 MYH16Q9H6N6 1097 aa19.11■□□□□ 0.65
VRK3-212ENST00000596814 PCDH11XQ9BZA7 1347 aa19.1■□□□□ 0.65
VRK3-212ENST00000596814 PCDH11YQ9BZA8 1340 aa19.1■□□□□ 0.65
VRK3-212ENST00000596814 SCN11AQ9UI33 1791 aa19.09■□□□□ 0.65
VRK3-212ENST00000596814 PHKG2P15735 406 aa19.09■□□□□ 0.65
VRK3-212ENST00000596814 IFNL2Q8IZJ0 200 aa19.09■□□□□ 0.65
VRK3-212ENST00000596814 CDCA7Q9BWT1 371 aaPredicted RBP19.09■□□□□ 0.65
VRK3-212ENST00000596814 IFT57Q9NWB7 429 aa19.09■□□□□ 0.65
VRK3-212ENST00000596814 CEMIPQ8WUJ3 1361 aa19.08■□□□□ 0.65
VRK3-212ENST00000596814 TNS2Q63HR2 1409 aa19.08■□□□□ 0.64
VRK3-212ENST00000596814 CYP27B1O15528 508 aa19.08■□□□□ 0.64
VRK3-212ENST00000596814 GNAI1P63096 354 aa19.08■□□□□ 0.64
VRK3-212ENST00000596814 BARGINQ6ZT62 677 aa19.08■□□□□ 0.64
VRK3-212ENST00000596814 IL17REQ8NFR9 667 aa19.08■□□□□ 0.64
VRK3-212ENST00000596814 LAS1LQ9Y4W2 734 aaKnown RBP19.08■□□□□ 0.64
VRK3-212ENST00000596814 FANCIQ9NVI1 1328 aa19.08■□□□□ 0.64
VRK3-212ENST00000596814 MPRIPQ6WCQ1 1025 aa19.07■□□□□ 0.64
VRK3-212ENST00000596814 ATRNO75882 1429 aa19.07■□□□□ 0.64
VRK3-212ENST00000596814 CFAP44Q96MT7 982 aa19.06■□□□□ 0.64
VRK3-212ENST00000596814 KDM6AO15550 1401 aaPredicted RBP19.06■□□□□ 0.64
VRK3-212ENST00000596814 RNMTO43148 476 aaKnown RBP19.05■□□□□ 0.64
VRK3-212ENST00000596814 HSP90AB1P08238 724 aaKnown RBP19.05■□□□□ 0.64
VRK3-212ENST00000596814 ZNF853P0CG23 659 aa19.05■□□□□ 0.64
VRK3-212ENST00000596814 TSR2Q969E8 191 aaKnown RBP19.05■□□□□ 0.64
VRK3-212ENST00000596814 GLI3P10071 1580 aa19.05■□□□□ 0.64
VRK3-212ENST00000596814 SIPA1L3O60292 1781 aaPredicted RBP19.05■□□□□ 0.64
VRK3-212ENST00000596814 LGR6Q9HBX8 967 aa19.05■□□□□ 0.64
VRK3-212ENST00000596814 TRPC5Q9UL62 973 aaPredicted RBP19.04■□□□□ 0.64
VRK3-212ENST00000596814 DDX54Q8TDD1 881 aaKnown RBP19.03■□□□□ 0.64
VRK3-212ENST00000596814 THSD7AQ9UPZ6 1657 aa19.03■□□□□ 0.64
VRK3-212ENST00000596814 MRC1P22897 1456 aa19.03■□□□□ 0.64
VRK3-212ENST00000596814 EXOC5O00471 708 aa19.03■□□□□ 0.64
VRK3-212ENST00000596814 TEFQ10587 303 aa19.03■□□□□ 0.64
VRK3-212ENST00000596814 FAM98CQ17RN3 349 aaKnown RBP19.03■□□□□ 0.64
VRK3-212ENST00000596814 DCAF5Q96JK2 942 aa19.03■□□□□ 0.64
VRK3-212ENST00000596814 MBIPQ9NS73 344 aa19.03■□□□□ 0.64
VRK3-212ENST00000596814 KDM3BQ7LBC6 1761 aa19.01■□□□□ 0.63
VRK3-212ENST00000596814 CHL1O00533 1208 aa19.01■□□□□ 0.63
VRK3-212ENST00000596814 DDB1Q16531 1140 aa19.01■□□□□ 0.63
VRK3-212ENST00000596814 GJD4Q96KN9 370 aaPredicted RBP19.01■□□□□ 0.63
VRK3-212ENST00000596814 TOGARAM1Q9Y4F4 1720 aa19.01■□□□□ 0.63
VRK3-212ENST00000596814 NKX1-1Q15270 411 aaPredicted RBP19■□□□□ 0.63
VRK3-212ENST00000596814 TAF7Q15545 349 aaPredicted RBP19■□□□□ 0.63
VRK3-212ENST00000596814 TSPYL4Q9UJ04 414 aa19■□□□□ 0.63
VRK3-212ENST00000596814 BABAM1Q9NWV8 329 aa19■□□□□ 0.63
VRK3-212ENST00000596814 EXOSC9Q06265 439 aaKnown RBP18.99■□□□□ 0.63
VRK3-212ENST00000596814 QTRT2Q9H974 415 aaKnown RBP18.98■□□□□ 0.63
VRK3-212ENST00000596814 RCAN3Q9UKA8 241 aa18.98■□□□□ 0.63
VRK3-212ENST00000596814 ZNF772Q68DY9 489 aaPredicted RBP18.97■□□□□ 0.63
VRK3-212ENST00000596814 SLC52A2Q9HAB3 445 aa18.97■□□□□ 0.63
VRK3-212ENST00000596814 MIS18AQ9NYP9 233 aa18.97■□□□□ 0.63
VRK3-212ENST00000596814 A0A0G2JS52 829 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms