RNA–Protein interactions for RNA: ENST00000581383.1

SMCHD1-205, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 806 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-205ENST00000581383 NLRP3Q96P20 1036 aa9.45□□□□□ -0.9
SMCHD1-205ENST00000581383 PRICKLE2Q7Z3G6 844 aa9.44□□□□□ -0.9
SMCHD1-205ENST00000581383 SNRKQ9NRH2 765 aa9.44□□□□□ -0.9
SMCHD1-205ENST00000581383 PCDHB11Q9Y5F2 797 aa9.44□□□□□ -0.9
SMCHD1-205ENST00000581383 LILRA1O75019 489 aa9.43□□□□□ -0.9
SMCHD1-205ENST00000581383 VSIG8P0DPA2 414 aa9.43□□□□□ -0.9
SMCHD1-205ENST00000581383 SLC27A3Q5K4L6 730 aa9.43□□□□□ -0.9
SMCHD1-205ENST00000581383 CC2D2BQ6DHV5 1058 aa9.43□□□□□ -0.9
SMCHD1-205ENST00000581383 RNF217Q8TC41 542 aa9.43□□□□□ -0.9
SMCHD1-205ENST00000581383 CNTNAP3BQ96NU0 1288 aa9.43□□□□□ -0.9
SMCHD1-205ENST00000581383 CNTNAP3Q9BZ76 1288 aa9.43□□□□□ -0.9
SMCHD1-205ENST00000581383 GDF11O95390 407 aa9.42□□□□□ -0.9
SMCHD1-205ENST00000581383 SV2AQ7L0J3 742 aa9.42□□□□□ -0.9
SMCHD1-205ENST00000581383 VWA5B2Q8N398 1253 aa9.42□□□□□ -0.9
SMCHD1-205ENST00000581383 MTMR14Q8NCE2 650 aa9.42□□□□□ -0.9
SMCHD1-205ENST00000581383 ITGA6P23229 1130 aa9.41□□□□□ -0.9
SMCHD1-205ENST00000581383 CYP2U1Q7Z449 544 aa9.41□□□□□ -0.9
SMCHD1-205ENST00000581383 SLC35F4A4IF30 521 aa9.4□□□□□ -0.9
SMCHD1-205ENST00000581383 MYCP01106 439 aaPredicted RBP9.4□□□□□ -0.9
SMCHD1-205ENST00000581383 RHOQP17081 205 aa9.39□□□□□ -0.91
SMCHD1-205ENST00000581383 EIF4G2P78344 907 aaKnown RBP eCLIP9.39□□□□□ -0.91
SMCHD1-205ENST00000581383 RASSF7Q02833 373 aa9.39□□□□□ -0.91
SMCHD1-205ENST00000581383 XP32Q5T750 250 aa9.39□□□□□ -0.91
SMCHD1-205ENST00000581383 RIPOR1Q6ZS17 1223 aa9.39□□□□□ -0.91
SMCHD1-205ENST00000581383 COL25A1Q9BXS0 654 aaPredicted RBP9.39□□□□□ -0.91
SMCHD1-205ENST00000581383 A0A1W2PRU2 124 aa9.38□□□□□ -0.91
SMCHD1-205ENST00000581383 GTF2E1P29083 439 aaPredicted RBP9.38□□□□□ -0.91
SMCHD1-205ENST00000581383 FOXD4L5Q5VV16 416 aaPredicted RBP9.38□□□□□ -0.91
SMCHD1-205ENST00000581383 FLIIQ13045 1269 aa9.37□□□□□ -0.91
SMCHD1-205ENST00000581383 FOXR1Q6PIV2 292 aa9.37□□□□□ -0.91
SMCHD1-205ENST00000581383 SOCS7O14512 581 aa9.36□□□□□ -0.91
SMCHD1-205ENST00000581383 RNF144AP50876 292 aaPredicted RBP9.36□□□□□ -0.91
SMCHD1-205ENST00000581383 ERVK-9P63128 1117 aa9.36□□□□□ -0.91
SMCHD1-205ENST00000581383 GPR161Q8N6U8 529 aaKnown RBP9.36□□□□□ -0.91
SMCHD1-205ENST00000581383 GAS2L1Q99501 681 aaPredicted RBP9.36□□□□□ -0.91
SMCHD1-205ENST00000581383 TBC1D2BQ9UPU7 963 aa9.36□□□□□ -0.91
SMCHD1-205ENST00000581383 ABL2P42684 1182 aa9.35□□□□□ -0.91
SMCHD1-205ENST00000581383 SLFNL1Q499Z3 407 aa9.35□□□□□ -0.91
SMCHD1-205ENST00000581383 NANOS1Q8WY41 292 aaKnown RBP9.35□□□□□ -0.91
SMCHD1-205ENST00000581383 ZMYND15Q9H091 742 aa9.35□□□□□ -0.91
SMCHD1-205ENST00000581383 ARHGEF10LQ9HCE6 1279 aa9.35□□□□□ -0.91
SMCHD1-205ENST00000581383 SUPT5HO00267 1087 aaKnown RBP9.34□□□□□ -0.91
SMCHD1-205ENST00000581383 SVOPQ8N4V2 548 aa9.34□□□□□ -0.91
SMCHD1-205ENST00000581383 GPC1P35052 558 aa9.33□□□□□ -0.92
SMCHD1-205ENST00000581383 SCTRP47872 440 aa9.33□□□□□ -0.92
SMCHD1-205ENST00000581383 POU4F2Q12837 409 aa9.33□□□□□ -0.92
SMCHD1-205ENST00000581383 KDF1Q8NAX2 398 aaPredicted RBP9.33□□□□□ -0.92
SMCHD1-205ENST00000581383 RAB6BQ9NRW1 208 aa9.33□□□□□ -0.92
SMCHD1-205ENST00000581383 CEP126Q9P2H0 1117 aa9.33□□□□□ -0.92
SMCHD1-205ENST00000581383 RNF225M0QZC1 329 aaPredicted RBP9.32□□□□□ -0.92
SMCHD1-205ENST00000581383 RNF135Q8IUD6 432 aa9.31□□□□□ -0.92
SMCHD1-205ENST00000581383 KRTAP4-8Q9BYQ9 185 aa9.31□□□□□ -0.92
SMCHD1-205ENST00000581383 DOLKQ9UPQ8 538 aa9.31□□□□□ -0.92
SMCHD1-205ENST00000581383 SENP3-EIF4A1A0A087X0R7 540 aa9.3□□□□□ -0.92
SMCHD1-205ENST00000581383 H7C1W4 665 aa9.3□□□□□ -0.92
SMCHD1-205ENST00000581383 MAP3K10Q02779 954 aa9.3□□□□□ -0.92
SMCHD1-205ENST00000581383 VAC14Q08AM6 782 aa9.3□□□□□ -0.92
SMCHD1-205ENST00000581383 CLN3Q13286 438 aa9.3□□□□□ -0.92
SMCHD1-205ENST00000581383 MCM6Q14566 821 aa9.3□□□□□ -0.92
SMCHD1-205ENST00000581383 OXLD1Q5BKU9 147 aa9.3□□□□□ -0.92
SMCHD1-205ENST00000581383 GDPD2Q9HCC8 539 aa9.3□□□□□ -0.92
SMCHD1-205ENST00000581383 TIMMDC1Q9NPL8 285 aa9.3□□□□□ -0.92
SMCHD1-205ENST00000581383 GNRH1P01148 92 aa9.29□□□□□ -0.92
SMCHD1-205ENST00000581383 USP4Q13107 963 aa9.29□□□□□ -0.92
SMCHD1-205ENST00000581383 SEMA3FQ13275 785 aa9.29□□□□□ -0.92
SMCHD1-205ENST00000581383 ESCO1Q5FWF5 840 aa9.29□□□□□ -0.92
SMCHD1-205ENST00000581383 RNFT1Q5M7Z0 435 aa9.29□□□□□ -0.92
SMCHD1-205ENST00000581383 TMEM214Q6NUQ4 689 aaKnown RBP9.29□□□□□ -0.92
SMCHD1-205ENST00000581383 TAS1R3Q7RTX0 852 aa9.29□□□□□ -0.92
SMCHD1-205ENST00000581383 WWC1Q8IX03 1113 aa9.29□□□□□ -0.92
SMCHD1-205ENST00000581383 SIRT1Q96EB6 747 aa9.29□□□□□ -0.92
SMCHD1-205ENST00000581383 TRERF1Q96PN7 1200 aa9.29□□□□□ -0.92
SMCHD1-205ENST00000581383 OSBPL3Q9H4L5 887 aa9.29□□□□□ -0.92
SMCHD1-205ENST00000581383 IGHA1P01876 353 aa9.28□□□□□ -0.92
SMCHD1-205ENST00000581383 KRT76Q01546 638 aa9.28□□□□□ -0.92
SMCHD1-205ENST00000581383 CNKSR1Q969H4 720 aa9.28□□□□□ -0.92
SMCHD1-205ENST00000581383 UBTFP17480 764 aaKnown RBP9.27□□□□□ -0.93
SMCHD1-205ENST00000581383 MARSP56192 900 aaKnown RBP9.27□□□□□ -0.93
SMCHD1-205ENST00000581383 WASHC4Q2M389 1173 aa9.27□□□□□ -0.93
SMCHD1-205ENST00000581383 GNASQ5JWF2 1037 aa9.27□□□□□ -0.93
SMCHD1-205ENST00000581383 GPAT2Q6NUI2 795 aa9.27□□□□□ -0.93
SMCHD1-205ENST00000581383 GMCL1Q96IK5 515 aa9.27□□□□□ -0.93
SMCHD1-205ENST00000581383 ZSCAN10Q96SZ4 725 aaPredicted RBP9.27□□□□□ -0.93
SMCHD1-205ENST00000581383 CDCA7Q9BWT1 371 aaPredicted RBP9.27□□□□□ -0.93
SMCHD1-205ENST00000581383 DYRK1BQ9Y463 629 aa9.27□□□□□ -0.93
SMCHD1-205ENST00000581383 WASLO00401 505 aaPredicted RBP9.26□□□□□ -0.93
SMCHD1-205ENST00000581383 PHKA2P46019 1235 aa9.26□□□□□ -0.93
SMCHD1-205ENST00000581383 NBPF10Q6P3W6 841 aaKnown RBP9.26□□□□□ -0.93
SMCHD1-205ENST00000581383 TRIM22Q8IYM9 498 aa9.26□□□□□ -0.93
SMCHD1-205ENST00000581383 NBPF15Q8N660 670 aa9.26□□□□□ -0.93
SMCHD1-205ENST00000581383 CLUAP1Q96AJ1 413 aa9.26□□□□□ -0.93
SMCHD1-205ENST00000581383 CCDC85AQ96PX6 553 aaPredicted RBP9.26□□□□□ -0.93
SMCHD1-205ENST00000581383 GPR25O00155 361 aa9.25□□□□□ -0.93
SMCHD1-205ENST00000581383 ADAMTS2O95450 1211 aa9.25□□□□□ -0.93
SMCHD1-205ENST00000581383 CENPCQ03188 943 aa9.25□□□□□ -0.93
SMCHD1-205ENST00000581383 ESYT1Q9BSJ8 1104 aa9.25□□□□□ -0.93
SMCHD1-205ENST00000581383 CUEDC1Q9NWM3 386 aaPredicted RBP9.25□□□□□ -0.93
SMCHD1-205ENST00000581383 TRAK2O60296 914 aa9.24□□□□□ -0.93
SMCHD1-205ENST00000581383 GPR37L1O60883 481 aa9.24□□□□□ -0.93
SMCHD1-205ENST00000581383 CSB-PGBD3P0DP91 1061 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms