RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 KCNQ2O43526 872 aa27.41■■□□□ 1.98
SS18-218ENST00000581021 ZCRB1Q8TBF4 217 aaKnown RBP27.41■■□□□ 1.98
SS18-218ENST00000581021 RAPGEF4Q8WZA2 1011 aa27.41■■□□□ 1.98
SS18-218ENST00000581021 BCL11BQ9C0K0 894 aaPredicted RBP27.4■■□□□ 1.98
SS18-218ENST00000581021 RREB1Q92766 1687 aa27.4■■□□□ 1.98
SS18-218ENST00000581021 PKD1L3Q7Z443 1732 aa27.39■■□□□ 1.98
SS18-218ENST00000581021 ACSBG1Q96GR2 724 aa27.39■■□□□ 1.98
SS18-218ENST00000581021 IGSF1Q8N6C5 1336 aa27.39■■□□□ 1.97
SS18-218ENST00000581021 TATP17735 454 aaPredicted RBP27.38■■□□□ 1.97
SS18-218ENST00000581021 MTHFSP49914 203 aa27.38■■□□□ 1.97
SS18-218ENST00000581021 IL13P35225 146 aa27.35■■□□□ 1.97
SS18-218ENST00000581021 COL3A1P02461 1466 aaPredicted RBP27.35■■□□□ 1.97
SS18-218ENST00000581021 NUP188Q5SRE5 1749 aa27.35■■□□□ 1.97
SS18-218ENST00000581021 DOT1LQ8TEK3 1739 aa27.35■■□□□ 1.97
SS18-218ENST00000581021 RGPD3A6NKT7 1758 aaPredicted RBP27.35■■□□□ 1.97
SS18-218ENST00000581021 RGPD4Q7Z3J3 1758 aa27.35■■□□□ 1.97
SS18-218ENST00000581021 PARD3Q8TEW0 1356 aa27.35■■□□□ 1.97
SS18-218ENST00000581021 CYP27B1O15528 508 aa27.33■■□□□ 1.97
SS18-218ENST00000581021 AEBP1Q8IUX7 1158 aa27.33■■□□□ 1.97
SS18-218ENST00000581021 BTAF1O14981 1849 aa27.32■■□□□ 1.96
SS18-218ENST00000581021 PCDH11XQ9BZA7 1347 aa27.31■■□□□ 1.96
SS18-218ENST00000581021 PCDH11YQ9BZA8 1340 aa27.31■■□□□ 1.96
SS18-218ENST00000581021 ZEB1P37275 1124 aaPredicted RBP27.3■■□□□ 1.96
SS18-218ENST00000581021 TOGARAM1Q9Y4F4 1720 aa27.3■■□□□ 1.96
SS18-218ENST00000581021 PLSCR1O15162 318 aa27.29■■□□□ 1.96
SS18-218ENST00000581021 PROM2Q8N271 834 aa27.29■■□□□ 1.96
SS18-218ENST00000581021 KDRP35968 1356 aa27.28■■□□□ 1.96
SS18-218ENST00000581021 SRCAPQ6ZRS2 3230 aa27.27■■□□□ 1.96
SS18-218ENST00000581021 PRIM1P49642 420 aaKnown RBP27.26■■□□□ 1.95
SS18-218ENST00000581021 PSDA5PKW4 1024 aaPredicted RBP27.24■■□□□ 1.95
SS18-218ENST00000581021 SULT6B1Q6IMI4 303 aa27.24■■□□□ 1.95
SS18-218ENST00000581021 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.24■■□□□ 1.957e-7■■■□□ 14.8
SS18-218ENST00000581021 PLEKHG2Q9H7P9 1386 aa27.23■■□□□ 1.95
SS18-218ENST00000581021 PPP2R1AP30153 589 aa27.23■■□□□ 1.95
SS18-218ENST00000581021 SPG7Q9UQ90 795 aa27.23■■□□□ 1.95
SS18-218ENST00000581021 DDX10Q13206 875 aaKnown RBP27.22■■□□□ 1.95
SS18-218ENST00000581021 SYTL4Q96C24 671 aaPredicted RBP27.22■■□□□ 1.95
SS18-218ENST00000581021 KAT6BQ8WYB5 2073 aa27.21■■□□□ 1.95
SS18-218ENST00000581021 DIAPH1O60610 1272 aaKnown RBP27.21■■□□□ 1.95
SS18-218ENST00000581021 TXNRD1Q16881 649 aa27.21■■□□□ 1.95
SS18-218ENST00000581021 PHKG2P15735 406 aa27.2■■□□□ 1.94
SS18-218ENST00000581021 R3HDM1Q15032 1099 aaKnown RBP27.2■■□□□ 1.94
SS18-218ENST00000581021 NKX1-1Q15270 411 aaPredicted RBP27.2■■□□□ 1.94
SS18-218ENST00000581021 ANO8Q9HCE9 1232 aaPredicted RBP27.2■■□□□ 1.94
SS18-218ENST00000581021 HMOX1P09601 288 aa27.18■■□□□ 1.94
SS18-218ENST00000581021 PAPPAQ13219 1627 aa27.16■■□□□ 1.94
SS18-218ENST00000581021 IFNL2Q8IZJ0 200 aa27.15■■□□□ 1.94
SS18-218ENST00000581021 ITGB4P16144 1822 aa27.15■■□□□ 1.94
SS18-218ENST00000581021 LRRC4BQ9NT99 713 aa27.14■■□□□ 1.94
SS18-218ENST00000581021 KDM6AO15550 1401 aaPredicted RBP27.14■■□□□ 1.93
SS18-218ENST00000581021 LY75O60449 1722 aa27.13■■□□□ 1.93
SS18-218ENST00000581021 PLEKHO1Q53GL0 409 aaPredicted RBP27.13■■□□□ 1.93
SS18-218ENST00000581021 ZNF530Q6P9A1 599 aaPredicted RBP27.13■■□□□ 1.93
SS18-218ENST00000581021 AMOTQ4VCS5 1084 aa27.11■■□□□ 1.93
SS18-218ENST00000581021 MPRIPQ6WCQ1 1025 aa27.11■■□□□ 1.93
SS18-218ENST00000581021 U2SURPO15042 1029 aaKnown RBP27.1■■□□□ 1.93
SS18-218ENST00000581021 KCNQ4P56696 695 aa27.1■■□□□ 1.93
SS18-218ENST00000581021 PIGBQ92521 554 aa27.1■■□□□ 1.93
SS18-218ENST00000581021 NBPF14Q5TI25 921 aa27.08■■□□□ 1.93
SS18-218ENST00000581021 CFAP53Q96M91 514 aa27.08■■□□□ 1.93
SS18-218ENST00000581021 ZNF827Q17R98 1081 aa27.05■■□□□ 1.92
SS18-218ENST00000581021 PDGFDQ9GZP0 370 aaPredicted RBP27.05■■□□□ 1.92
SS18-218ENST00000581021 PALLDQ8WX93 1383 aa27.05■■□□□ 1.92
SS18-218ENST00000581021 MTHFSDQ2M296 383 aaKnown RBP27.04■■□□□ 1.92
SS18-218ENST00000581021 DCAF5Q96JK2 942 aa27.04■■□□□ 1.92
SS18-218ENST00000581021 CASZ1Q86V15 1759 aa27.04■■□□□ 1.92
SS18-218ENST00000581021 SLC27A3Q5K4L6 730 aa27.03■■□□□ 1.92
SS18-218ENST00000581021 LRP5O75197 1615 aa27.02■■□□□ 1.92
SS18-218ENST00000581021 C1orf141Q5JVX7 400 aa27.02■■□□□ 1.92
SS18-218ENST00000581021 RSPH6AQ9H0K4 717 aa27.02■■□□□ 1.92
SS18-218ENST00000581021 TMOD3Q9NYL9 352 aa27.02■■□□□ 1.92
SS18-218ENST00000581021 HSP90AB1P08238 724 aaKnown RBP27.01■■□□□ 1.91
SS18-218ENST00000581021 RALBP1Q15311 655 aa27.01■■□□□ 1.91
SS18-218ENST00000581021 SLC15A2Q16348 729 aa27.01■■□□□ 1.91
SS18-218ENST00000581021 CCNL1Q9UK58 526 aaPredicted RBP27.01■■□□□ 1.91
SS18-218ENST00000581021 ASAP1Q9ULH1 1129 aa27.01■■□□□ 1.91
SS18-218ENST00000581021 STK32BQ9NY57 414 aa27■■□□□ 1.91
SS18-218ENST00000581021 ADAMTS7Q9UKP4 1686 aa27■■□□□ 1.91
SS18-218ENST00000581021 SCN11AQ9UI33 1791 aa26.99■■□□□ 1.91
SS18-218ENST00000581021 ERVV-2B6SEH9 535 aa26.99■■□□□ 1.91
SS18-218ENST00000581021 AKAP4Q5JQC9 854 aa26.99■■□□□ 1.91
SS18-218ENST00000581021 AKT1S1Q96B36 256 aa26.99■■□□□ 1.91
SS18-218ENST00000581021 PHACTR3Q96KR7 559 aa26.99■■□□□ 1.91
SS18-218ENST00000581021 U2AF1L5P0DN76 240 aaPredicted RBP26.98■■□□□ 1.91
SS18-218ENST00000581021 PRKAR2BP31323 418 aa26.98■■□□□ 1.91
SS18-218ENST00000581021 U2AF1Q01081 240 aaKnown RBP eCLIP26.98■■□□□ 1.912e-6■■■■□ 21.7
SS18-218ENST00000581021 ATG3Q9NT62 314 aa26.98■■□□□ 1.91
SS18-218ENST00000581021 LGR6Q9HBX8 967 aa26.97■■□□□ 1.91
SS18-218ENST00000581021 NUDCQ9Y266 331 aa26.97■■□□□ 1.91
SS18-218ENST00000581021 C5P01031 1676 aa26.97■■□□□ 1.91
SS18-218ENST00000581021 MRC1P22897 1456 aa26.96■■□□□ 1.91
SS18-218ENST00000581021 TUBGCP6Q96RT7 1819 aa26.96■■□□□ 1.91
SS18-218ENST00000581021 ZNF316A6NFI3 1004 aaPredicted RBP26.95■■□□□ 1.9
SS18-218ENST00000581021 SMARCC1Q92922 1105 aaPredicted RBP26.95■■□□□ 1.9
SS18-218ENST00000581021 CABP4P57796 275 aa26.94■■□□□ 1.9
SS18-218ENST00000581021 TAF1LQ8IZX4 1826 aa26.94■■□□□ 1.9
SS18-218ENST00000581021 MYBBP1AQ9BQG0 1328 aaKnown RBP26.93■■□□□ 1.9
SS18-218ENST00000581021 VIRMAQ69YN4 1812 aaKnown RBP26.93■■□□□ 1.9
SS18-218ENST00000581021 RNMTO43148 476 aaKnown RBP26.92■■□□□ 1.9
SS18-218ENST00000581021 NFATC2IPQ8NCF5 419 aa26.92■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms