RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 LARP1Q6PKG0 1096 aaKnown RBP19.96■□□□□ 0.79
SS18-215ENST00000580642 RTF1Q92541 710 aaKnown RBP19.96■□□□□ 0.79
SS18-215ENST00000580642 CDCA7Q9BWT1 371 aaPredicted RBP19.96■□□□□ 0.79
SS18-215ENST00000580642 SPG7Q9UQ90 795 aa19.96■□□□□ 0.79
SS18-215ENST00000580642 GNAT3A8MTJ3 354 aa19.95■□□□□ 0.78
SS18-215ENST00000580642 AKAP4Q5JQC9 854 aa19.95■□□□□ 0.78
SS18-215ENST00000580642 MYH16Q9H6N6 1097 aa19.95■□□□□ 0.78
SS18-215ENST00000580642 STRN4Q9NRL3 753 aa19.95■□□□□ 0.78
SS18-215ENST00000580642 FBXO41Q8TF61 875 aa19.94■□□□□ 0.78
SS18-215ENST00000580642 MAP3K5Q99683 1374 aa19.94■□□□□ 0.78
SS18-215ENST00000580642 OVOS2A0A0G2JMS6 1433 aa19.93■□□□□ 0.78
SS18-215ENST00000580642 IL2RBP14784 551 aa19.93■□□□□ 0.78
SS18-215ENST00000580642 UNC5CLQ8IV45 518 aa19.93■□□□□ 0.78
SS18-215ENST00000580642 NGLY1Q96IV0 654 aa19.93■□□□□ 0.78
SS18-215ENST00000580642 RGPD2P0DJD1 1756 aa19.93■□□□□ 0.78
SS18-215ENST00000580642 PLCH1Q4KWH8 1693 aa19.92■□□□□ 0.78
SS18-215ENST00000580642 BABAM1Q9NWV8 329 aa19.92■□□□□ 0.78
SS18-215ENST00000580642 HSP90AB1P08238 724 aaKnown RBP19.91■□□□□ 0.78
SS18-215ENST00000580642 C1orf141Q5JVX7 400 aa19.91■□□□□ 0.78
SS18-215ENST00000580642 DUSP27Q5VZP5 1158 aa19.91■□□□□ 0.78
SS18-215ENST00000580642 IFT57Q9NWB7 429 aa19.91■□□□□ 0.78
SS18-215ENST00000580642 LRP6O75581 1613 aa19.91■□□□□ 0.78
SS18-215ENST00000580642 NRAPQ86VF7 1730 aa19.9■□□□□ 0.78
SS18-215ENST00000580642 GNAI1P63096 354 aa19.9■□□□□ 0.78
SS18-215ENST00000580642 CDCA7LQ96GN5 454 aa19.9■□□□□ 0.78
SS18-215ENST00000580642 MEGF6O75095 1541 aa19.9■□□□□ 0.78
SS18-215ENST00000580642 SENP3-EIF4A1A0A087X0R7 540 aa19.89■□□□□ 0.77
SS18-215ENST00000580642 VPS72Q15906 364 aa19.89■□□□□ 0.77
SS18-215ENST00000580642 SPATA31A1Q5TZJ5 1347 aa19.89■□□□□ 0.77
SS18-215ENST00000580642 SPATA31A5Q5VU36 1347 aa19.89■□□□□ 0.77
SS18-215ENST00000580642 ZNF530Q6P9A1 599 aaPredicted RBP19.89■□□□□ 0.77
SS18-215ENST00000580642 BARGINQ6ZT62 677 aa19.89■□□□□ 0.77
SS18-215ENST00000580642 SPATA31A7Q8IWB4 1347 aa19.89■□□□□ 0.77
SS18-215ENST00000580642 CFAP44Q96MT7 982 aa19.89■□□□□ 0.77
SS18-215ENST00000580642 C8orf37Q96NL8 207 aa19.89■□□□□ 0.77
SS18-215ENST00000580642 PARP4Q9UKK3 1724 aaKnown RBP19.88■□□□□ 0.77
SS18-215ENST00000580642 BCL9LQ86UU0 1499 aa19.88■□□□□ 0.77
SS18-215ENST00000580642 DISP2A7MBM2 1401 aa19.88■□□□□ 0.77
SS18-215ENST00000580642 CT47B1P0C2W7 299 aaPredicted RBP19.88■□□□□ 0.77
SS18-215ENST00000580642 ZNF853P0CG23 659 aa19.88■□□□□ 0.77
SS18-215ENST00000580642 MEX3CQ5U5Q3 659 aaKnown RBP19.88■□□□□ 0.77
SS18-215ENST00000580642 IFNL2Q8IZJ0 200 aa19.88■□□□□ 0.77
SS18-215ENST00000580642 CEMIPQ8WUJ3 1361 aa19.87■□□□□ 0.77
SS18-215ENST00000580642 PCDH11XQ9BZA7 1347 aa19.87■□□□□ 0.77
SS18-215ENST00000580642 PCDH11YQ9BZA8 1340 aa19.87■□□□□ 0.77
SS18-215ENST00000580642 ZCRB1Q8TBF4 217 aaKnown RBP19.87■□□□□ 0.77
SS18-215ENST00000580642 PKD1L3Q7Z443 1732 aa19.86■□□□□ 0.77
SS18-215ENST00000580642 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.85■□□□□ 0.77
SS18-215ENST00000580642 PHKG2P15735 406 aa19.85■□□□□ 0.77
SS18-215ENST00000580642 USP21Q9UK80 565 aa19.85■□□□□ 0.77
SS18-215ENST00000580642 DLG5Q8TDM6 1919 aa19.84■□□□□ 0.77
SS18-215ENST00000580642 NKX1-1Q15270 411 aaPredicted RBP19.84■□□□□ 0.77
SS18-215ENST00000580642 IL17REQ8NFR9 667 aa19.84■□□□□ 0.77
SS18-215ENST00000580642 DCAF5Q96JK2 942 aa19.84■□□□□ 0.77
SS18-215ENST00000580642 SPINK5Q9NQ38 1064 aaPredicted RBP19.84■□□□□ 0.77
SS18-215ENST00000580642 CHL1O00533 1208 aa19.83■□□□□ 0.77
SS18-215ENST00000580642 MCM10Q7L590 875 aa19.83■□□□□ 0.77
SS18-215ENST00000580642 FANCIQ9NVI1 1328 aa19.82■□□□□ 0.76
SS18-215ENST00000580642 ZNF428Q96B54 188 aa19.82■□□□□ 0.76
SS18-215ENST00000580642 ADAMTS7Q9UKP4 1686 aa19.81■□□□□ 0.76
SS18-215ENST00000580642 LRRC37A3O60309 1634 aa19.81■□□□□ 0.76
SS18-215ENST00000580642 CYP27B1O15528 508 aa19.81■□□□□ 0.76
SS18-215ENST00000580642 RNMTO43148 476 aaKnown RBP19.81■□□□□ 0.76
SS18-215ENST00000580642 TAF7Q15545 349 aaPredicted RBP19.81■□□□□ 0.76
SS18-215ENST00000580642 SOS1Q07889 1333 aaPredicted RBP19.8■□□□□ 0.76
SS18-215ENST00000580642 EXOC5O00471 708 aa19.8■□□□□ 0.76
SS18-215ENST00000580642 DCTN1Q14203 1278 aa19.8■□□□□ 0.76
SS18-215ENST00000580642 THUMPD2Q9BTF0 503 aaKnown RBP19.8■□□□□ 0.76
SS18-215ENST00000580642 USP35Q9P2H5 1018 aa19.8■□□□□ 0.76
SS18-215ENST00000580642 TRPC5Q9UL62 973 aaPredicted RBP19.8■□□□□ 0.76
SS18-215ENST00000580642 AFF2P51816 1311 aa19.79■□□□□ 0.76
SS18-215ENST00000580642 TEFQ10587 303 aa19.79■□□□□ 0.76
SS18-215ENST00000580642 RCAN3Q9UKA8 241 aa19.79■□□□□ 0.76
SS18-215ENST00000580642 CCDC9Q9Y3X0 531 aaKnown RBP19.79■□□□□ 0.76
SS18-215ENST00000580642 TNS2Q63HR2 1409 aa19.78■□□□□ 0.76
SS18-215ENST00000580642 ATRNO75882 1429 aa19.77■□□□□ 0.76
SS18-215ENST00000580642 ERVV-2B6SEH9 535 aa19.77■□□□□ 0.76
SS18-215ENST00000580642 MPRIPQ6WCQ1 1025 aa19.77■□□□□ 0.76
SS18-215ENST00000580642 CHMP4AQ9BY43 222 aa19.77■□□□□ 0.76
SS18-215ENST00000580642 MBIPQ9NS73 344 aa19.77■□□□□ 0.76
SS18-215ENST00000580642 LGR6Q9HBX8 967 aa19.76■□□□□ 0.75
SS18-215ENST00000580642 MRC1P22897 1456 aa19.75■□□□□ 0.75
SS18-215ENST00000580642 ONECUT3O60422 494 aaPredicted RBP19.75■□□□□ 0.75
SS18-215ENST00000580642 DDB1Q16531 1140 aa19.75■□□□□ 0.75
SS18-215ENST00000580642 ZNF772Q68DY9 489 aaPredicted RBP19.75■□□□□ 0.75
SS18-215ENST00000580642 TSR2Q969E8 191 aaKnown RBP19.75■□□□□ 0.75
SS18-215ENST00000580642 GJD4Q96KN9 370 aaPredicted RBP19.75■□□□□ 0.75
SS18-215ENST00000580642 TSPYL4Q9UJ04 414 aa19.75■□□□□ 0.75
SS18-215ENST00000580642 LAS1LQ9Y4W2 734 aaKnown RBP19.75■□□□□ 0.75
SS18-215ENST00000580642 KDM6AO15550 1401 aaPredicted RBP19.75■□□□□ 0.75
SS18-215ENST00000580642 RNF123Q5XPI4 1314 aa19.75■□□□□ 0.75
SS18-215ENST00000580642 WNK3Q9BYP7 1800 aa19.74■□□□□ 0.75
SS18-215ENST00000580642 SLC52A2Q9HAB3 445 aa19.74■□□□□ 0.75
SS18-215ENST00000580642 EXOSC9Q06265 439 aaKnown RBP19.73■□□□□ 0.75
SS18-215ENST00000580642 DDX54Q8TDD1 881 aaKnown RBP19.72■□□□□ 0.75
SS18-215ENST00000580642 SCN11AQ9UI33 1791 aa19.7■□□□□ 0.74
SS18-215ENST00000580642 BTBD11A6QL63 1104 aa19.7■□□□□ 0.74
SS18-215ENST00000580642 HOXB7P09629 217 aa19.7■□□□□ 0.74
SS18-215ENST00000580642 CABP4P57796 275 aa19.7■□□□□ 0.74
SS18-215ENST00000580642 ALDH1L2Q3SY69 923 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms