RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 DEFB132Q7Z7B7 95 aa12.56□□□□□ -0.4
VPS35-206ENST00000565228 TOGARAM1Q9Y4F4 1720 aa12.55□□□□□ -0.4
VPS35-206ENST00000565228 ZNF316A6NFI3 1004 aaPredicted RBP12.55□□□□□ -0.4
VPS35-206ENST00000565228 EXOC5O00471 708 aa12.54□□□□□ -0.4
VPS35-206ENST00000565228 KCNQ2O43526 872 aa12.54□□□□□ -0.4
VPS35-206ENST00000565228 TRIM37O94972 964 aa12.54□□□□□ -0.4
VPS35-206ENST00000565228 CYP27B1O15528 508 aa12.53□□□□□ -0.4
VPS35-206ENST00000565228 PDE3BQ13370 1112 aa12.53□□□□□ -0.4
VPS35-206ENST00000565228 CDCA7Q9BWT1 371 aaPredicted RBP12.53□□□□□ -0.4
VPS35-206ENST00000565228 BCL9O00512 1426 aa12.53□□□□□ -0.4
VPS35-206ENST00000565228 KDRP35968 1356 aa12.52□□□□□ -0.41
VPS35-206ENST00000565228 KAT6BQ8WYB5 2073 aa12.52□□□□□ -0.41
VPS35-206ENST00000565228 DOT1LQ8TEK3 1739 aa12.51□□□□□ -0.41
VPS35-206ENST00000565228 FAM196AQ6ZSG2 479 aa12.51□□□□□ -0.41
VPS35-206ENST00000565228 DDX54Q8TDD1 881 aaKnown RBP12.51□□□□□ -0.41
VPS35-206ENST00000565228 ACSBG1Q96GR2 724 aa12.51□□□□□ -0.41
VPS35-206ENST00000565228 NHSQ6T4R5 1651 aa12.51□□□□□ -0.41
VPS35-206ENST00000565228 HMOX1P09601 288 aa12.5□□□□□ -0.41
VPS35-206ENST00000565228 SULT6B1Q6IMI4 303 aa12.5□□□□□ -0.41
VPS35-206ENST00000565228 ZCRB1Q8TBF4 217 aaKnown RBP12.5□□□□□ -0.41
VPS35-206ENST00000565228 BTAF1O14981 1849 aa12.49□□□□□ -0.41
VPS35-206ENST00000565228 ITGB4P16144 1822 aa12.49□□□□□ -0.41
VPS35-206ENST00000565228 TATP17735 454 aaPredicted RBP12.49□□□□□ -0.41
VPS35-206ENST00000565228 EN1Q05925 392 aaPredicted RBP12.49□□□□□ -0.41
VPS35-206ENST00000565228 CCDC184Q52MB2 194 aa12.49□□□□□ -0.41
VPS35-206ENST00000565228 PROM2Q8N271 834 aa12.49□□□□□ -0.41
VPS35-206ENST00000565228 CAMKK2Q96RR4 588 aa12.49□□□□□ -0.41
VPS35-206ENST00000565228 DIAPH1O60610 1272 aaKnown RBP12.48□□□□□ -0.41
VPS35-206ENST00000565228 EZH2Q15910 746 aaKnown RBP12.48□□□□□ -0.41
VPS35-206ENST00000565228 RAPGEF4Q8WZA2 1011 aa12.48□□□□□ -0.41
VPS35-206ENST00000565228 RREB1Q92766 1687 aa12.48□□□□□ -0.41
VPS35-206ENST00000565228 PRKRIP1Q9H875 184 aaPredicted RBP12.47□□□□□ -0.41
VPS35-206ENST00000565228 LRP5O75197 1615 aa12.47□□□□□ -0.41
VPS35-206ENST00000565228 KDM6AO15550 1401 aaPredicted RBP12.46□□□□□ -0.41
VPS35-206ENST00000565228 VIRMAQ69YN4 1812 aaKnown RBP12.46□□□□□ -0.41
VPS35-206ENST00000565228 NUP188Q5SRE5 1749 aa12.46□□□□□ -0.41
VPS35-206ENST00000565228 APBA3O96018 575 aa12.45□□□□□ -0.42
VPS35-206ENST00000565228 PHKG2P15735 406 aa12.45□□□□□ -0.42
VPS35-206ENST00000565228 PRIM1P49642 420 aaKnown RBP12.45□□□□□ -0.42
VPS35-206ENST00000565228 NKX1-1Q15270 411 aaPredicted RBP12.45□□□□□ -0.42
VPS35-206ENST00000565228 CCDC125Q86Z20 511 aa12.45□□□□□ -0.42
VPS35-206ENST00000565228 PHACTR3Q96KR7 559 aa12.45□□□□□ -0.42
VPS35-206ENST00000565228 BCL11BQ9C0K0 894 aaPredicted RBP12.45□□□□□ -0.42
VPS35-206ENST00000565228 RSPH6AQ9H0K4 717 aa12.45□□□□□ -0.42
VPS35-206ENST00000565228 RALBP1Q15311 655 aa12.44□□□□□ -0.42
VPS35-206ENST00000565228 MTHFSDQ2M296 383 aaKnown RBP12.44□□□□□ -0.42
VPS35-206ENST00000565228 PCDH11XQ9BZA7 1347 aa12.43□□□□□ -0.42
VPS35-206ENST00000565228 PCDH11YQ9BZA8 1340 aa12.43□□□□□ -0.42
VPS35-206ENST00000565228 ADAMTS7Q9UKP4 1686 aa12.43□□□□□ -0.42
VPS35-206ENST00000565228 U2SURPO15042 1029 aaKnown RBP12.43□□□□□ -0.42
VPS35-206ENST00000565228 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.43□□□□□ -0.421e-16■■■□□ 15.4
VPS35-206ENST00000565228 RGPD3A6NKT7 1758 aaPredicted RBP12.43□□□□□ -0.42
VPS35-206ENST00000565228 RGPD4Q7Z3J3 1758 aa12.43□□□□□ -0.42
VPS35-206ENST00000565228 MYBBP1AQ9BQG0 1328 aaKnown RBP12.42□□□□□ -0.42
VPS35-206ENST00000565228 KCNQ4P56696 695 aa12.42□□□□□ -0.42
VPS35-206ENST00000565228 LRRC4BQ9NT99 713 aa12.42□□□□□ -0.42
VPS35-206ENST00000565228 SCN11AQ9UI33 1791 aa12.42□□□□□ -0.42
VPS35-206ENST00000565228 LY75O60449 1722 aa12.42□□□□□ -0.42
VPS35-206ENST00000565228 PAPPAQ13219 1627 aa12.41□□□□□ -0.42
VPS35-206ENST00000565228 PIGBQ92521 554 aa12.41□□□□□ -0.42
VPS35-206ENST00000565228 PLEKHF1Q96S99 279 aa12.41□□□□□ -0.42
VPS35-206ENST00000565228 LGR6Q9HBX8 967 aa12.41□□□□□ -0.42
VPS35-206ENST00000565228 SPG7Q9UQ90 795 aa12.41□□□□□ -0.42
VPS35-206ENST00000565228 PLSCR1O15162 318 aa12.4□□□□□ -0.42
VPS35-206ENST00000565228 PRKAR2BP31323 418 aa12.4□□□□□ -0.42
VPS35-206ENST00000565228 BAG6P46379 1132 aa12.4□□□□□ -0.42
VPS35-206ENST00000565228 ZNF530Q6P9A1 599 aaPredicted RBP12.4□□□□□ -0.42
VPS35-206ENST00000565228 IFNL2Q8IZJ0 200 aa12.4□□□□□ -0.42
VPS35-206ENST00000565228 ANO8Q9HCE9 1232 aaPredicted RBP12.4□□□□□ -0.42
VPS35-206ENST00000565228 DLG5Q8TDM6 1919 aa12.4□□□□□ -0.42
VPS35-206ENST00000565228 PLEKHG2Q9H7P9 1386 aa12.4□□□□□ -0.42
VPS35-206ENST00000565228 U2AF1L5P0DN76 240 aaPredicted RBP12.39□□□□□ -0.43
VPS35-206ENST00000565228 U2AF1Q01081 240 aaKnown RBP eCLIP12.39□□□□□ -0.43
VPS35-206ENST00000565228 PLEKHO1Q53GL0 409 aaPredicted RBP12.39□□□□□ -0.43
VPS35-206ENST00000565228 MPRIPQ6WCQ1 1025 aa12.39□□□□□ -0.43
VPS35-206ENST00000565228 PPP4R3CPQ6ZMV5 832 aa12.39□□□□□ -0.43
VPS35-206ENST00000565228 SF3B2Q13435 895 aaKnown RBP12.38□□□□□ -0.43
VPS35-206ENST00000565228 TXNRD1Q16881 649 aa12.38□□□□□ -0.43
VPS35-206ENST00000565228 SYTL4Q96C24 671 aaPredicted RBP12.38□□□□□ -0.43
VPS35-206ENST00000565228 CFAP53Q96M91 514 aa12.38□□□□□ -0.43
VPS35-206ENST00000565228 SIPA1L3O60292 1781 aaPredicted RBP12.38□□□□□ -0.43
VPS35-206ENST00000565228 UTRNP46939 3433 aa12.37□□□□□ -0.43
VPS35-206ENST00000565228 TUBGCP6Q96RT7 1819 aa12.37□□□□□ -0.43
VPS35-206ENST00000565228 AMOTQ4VCS5 1084 aa12.37□□□□□ -0.43
VPS35-206ENST00000565228 IL17REQ8NFR9 667 aa12.37□□□□□ -0.43
VPS35-206ENST00000565228 SLC4A9Q96Q91 983 aa12.37□□□□□ -0.43
VPS35-206ENST00000565228 PDGFDQ9GZP0 370 aaPredicted RBP12.37□□□□□ -0.43
VPS35-206ENST00000565228 ASAP1Q9ULH1 1129 aa12.37□□□□□ -0.43
VPS35-206ENST00000565228 TAF1LQ8IZX4 1826 aa12.37□□□□□ -0.43
VPS35-206ENST00000565228 MRC1P22897 1456 aa12.36□□□□□ -0.43
VPS35-206ENST00000565228 PSDA5PKW4 1024 aaPredicted RBP12.36□□□□□ -0.43
VPS35-206ENST00000565228 ATG3Q9NT62 314 aa12.36□□□□□ -0.43
VPS35-206ENST00000565228 RNMTO43148 476 aaKnown RBP12.35□□□□□ -0.43
VPS35-206ENST00000565228 FCHSD2O94868 740 aa12.35□□□□□ -0.43
VPS35-206ENST00000565228 ZNF827Q17R98 1081 aa12.35□□□□□ -0.43
VPS35-206ENST00000565228 AKAP4Q5JQC9 854 aa12.35□□□□□ -0.43
VPS35-206ENST00000565228 AMIGO3Q86WK7 504 aa12.35□□□□□ -0.43
VPS35-206ENST00000565228 DCTN1Q14203 1278 aa12.34□□□□□ -0.43
VPS35-206ENST00000565228 DCAF5Q96JK2 942 aa12.34□□□□□ -0.43
VPS35-206ENST00000565228 ADAMTS8Q9UP79 889 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms