RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	TMPRSS4	Q9NRS4	437 aa		5.46	□□□□□ -1.54
SPG11-223	ENST00000560858	GPSM3	Q9Y4H4	160 aa		5.46	□□□□□ -1.54
SPG11-223	ENST00000560858	ZC3H4	Q9UPT8	1303 aa	Known RBP	5.46	□□□□□ -1.54
SPG11-223	ENST00000560858	TRIM66	O15016	1216 aa		5.45	□□□□□ -1.54
SPG11-223	ENST00000560858	MX2	P20592	715 aa		5.45	□□□□□ -1.54
SPG11-223	ENST00000560858	ADD1	P35611	737 aa	Known RBP	5.45	□□□□□ -1.54
SPG11-223	ENST00000560858	RAB15	P59190	212 aa		5.45	□□□□□ -1.54
SPG11-223	ENST00000560858	DBN1	Q16643	649 aa		5.45	□□□□□ -1.54
SPG11-223	ENST00000560858	VSIG10	Q8N0Z9	540 aa		5.45	□□□□□ -1.54
SPG11-223	ENST00000560858	ZC3H15	Q8WU90	426 aa	Known RBP	5.45	□□□□□ -1.54
SPG11-223	ENST00000560858	ACD	Q96AP0	544 aa		5.45	□□□□□ -1.54
SPG11-223	ENST00000560858	PSMG3-AS1	Q96PY0	264 aa		5.45	□□□□□ -1.54
SPG11-223	ENST00000560858	RSPH6A	Q9H0K4	717 aa		5.45	□□□□□ -1.54
SPG11-223	ENST00000560858	OIP5	O43482	229 aa		5.44	□□□□□ -1.54
SPG11-223	ENST00000560858	LILRA1	O75019	489 aa		5.44	□□□□□ -1.54
SPG11-223	ENST00000560858	RHOQ	P17081	205 aa		5.44	□□□□□ -1.54
SPG11-223	ENST00000560858	ADAM32	Q8TC27	787 aa		5.44	□□□□□ -1.54
SPG11-223	ENST00000560858	GTPBP3	Q969Y2	492 aa	Known RBP	5.44	□□□□□ -1.54
SPG11-223	ENST00000560858	AK7	Q96M32	723 aa		5.44	□□□□□ -1.54
SPG11-223	ENST00000560858	MKL2	Q9ULH7	1088 aa		5.44	□□□□□ -1.54
SPG11-223	ENST00000560858	DYRK1B	Q9Y463	629 aa		5.44	□□□□□ -1.54
SPG11-223	ENST00000560858	ERVH48-1	M5A8F1	160 aa		5.43	□□□□□ -1.54
SPG11-223	ENST00000560858	FURIN	P09958	794 aa		5.43	□□□□□ -1.54
SPG11-223	ENST00000560858	GPC1	P35052	558 aa		5.43	□□□□□ -1.54
SPG11-223	ENST00000560858	CLK2	P49760	499 aa	Known RBP	5.43	□□□□□ -1.54
SPG11-223	ENST00000560858	DZIP3	Q86Y13	1208 aa	Known RBP	5.43	□□□□□ -1.54
SPG11-223	ENST00000560858	KDF1	Q8NAX2	398 aa	Predicted RBP	5.43	□□□□□ -1.54
SPG11-223	ENST00000560858	PNMA1	Q8ND90	353 aa		5.43	□□□□□ -1.54
SPG11-223	ENST00000560858	GAS2L1	Q99501	681 aa	Predicted RBP	5.43	□□□□□ -1.54
SPG11-223	ENST00000560858	KRBA1	A5PL33	1030 aa		5.42	□□□□□ -1.54
SPG11-223	ENST00000560858	MAP2K3	P46734	347 aa		5.42	□□□□□ -1.54
SPG11-223	ENST00000560858	OXCT2	Q9BYC2	517 aa	Predicted RBP	5.42	□□□□□ -1.54
SPG11-223	ENST00000560858	ATP5J2-PTCD1	G3V325	749 aa		5.41	□□□□□ -1.54
SPG11-223	ENST00000560858	PIK3R2	O00459	728 aa		5.41	□□□□□ -1.54
SPG11-223	ENST00000560858	SNRPN	P63162	240 aa	Known RBP	5.41	□□□□□ -1.54
SPG11-223	ENST00000560858	NR6A1	Q15406	480 aa		5.41	□□□□□ -1.54
SPG11-223	ENST00000560858	SLC27A3	Q5K4L6	730 aa		5.41	□□□□□ -1.54
SPG11-223	ENST00000560858	PPP2R2D	Q66LE6	453 aa		5.41	□□□□□ -1.54
SPG11-223	ENST00000560858	LRRN4	Q8WUT4	740 aa		5.41	□□□□□ -1.54
SPG11-223	ENST00000560858	RRAGC	Q9HB90	399 aa		5.41	□□□□□ -1.54
SPG11-223	ENST00000560858	POLR3E	Q9NVU0	708 aa		5.41	□□□□□ -1.54
SPG11-223	ENST00000560858	MEN1	O00255	615 aa		5.4	□□□□□ -1.54
SPG11-223	ENST00000560858	SEPT12	Q8IYM1	358 aa		5.4	□□□□□ -1.54
SPG11-223	ENST00000560858	NLRP3	Q96P20	1036 aa		5.4	□□□□□ -1.54
SPG11-223	ENST00000560858	OCSTAMP	Q9BR26	566 aa		5.4	□□□□□ -1.54
SPG11-223	ENST00000560858	CYLD	Q9NQC7	956 aa		5.4	□□□□□ -1.54
SPG11-223	ENST00000560858	POU4F2	Q12837	409 aa		5.39	□□□□□ -1.55
SPG11-223	ENST00000560858	WDR44	Q5JSH3	913 aa		5.39	□□□□□ -1.55
SPG11-223	ENST00000560858		A0A1W2PRU2	124 aa		5.38	□□□□□ -1.55
SPG11-223	ENST00000560858	ESPN	B1AK53	854 aa		5.38	□□□□□ -1.55
SPG11-223	ENST00000560858	CFHR5	Q9BXR6	569 aa		5.38	□□□□□ -1.55
SPG11-223	ENST00000560858	NUCKS1	Q9H1E3	243 aa	Known RBP	5.38	□□□□□ -1.55
SPG11-223	ENST00000560858	GDF2	Q9UK05	429 aa	Predicted RBP	5.38	□□□□□ -1.55
SPG11-223	ENST00000560858	PHF24	Q9UPV7	400 aa		5.38	□□□□□ -1.55
SPG11-223	ENST00000560858	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	5.37	□□□□□ -1.55
SPG11-223	ENST00000560858	F11	P03951	625 aa		5.37	□□□□□ -1.55
SPG11-223	ENST00000560858	PDE4D	Q08499	809 aa		5.37	□□□□□ -1.55
SPG11-223	ENST00000560858	GRIN2C	Q14957	1233 aa		5.37	□□□□□ -1.55
SPG11-223	ENST00000560858	CCDC125	Q86Z20	511 aa		5.37	□□□□□ -1.55
SPG11-223	ENST00000560858	EDARADD	Q8WWZ3	215 aa		5.37	□□□□□ -1.55
SPG11-223	ENST00000560858	KRTAP9-2	Q9BYQ4	174 aa		5.37	□□□□□ -1.55
SPG11-223	ENST00000560858	TIMMDC1	Q9NPL8	285 aa		5.37	□□□□□ -1.55
SPG11-223	ENST00000560858	ATP1B4	Q9UN42	357 aa	Predicted RBP	5.37	□□□□□ -1.55
SPG11-223	ENST00000560858	AMPD1	P23109	780 aa		5.36	□□□□□ -1.55
SPG11-223	ENST00000560858	COL8A1	P27658	744 aa		5.36	□□□□□ -1.55
SPG11-223	ENST00000560858	NBPF10	Q6P3W6	841 aa	Known RBP	5.36	□□□□□ -1.55
SPG11-223	ENST00000560858	NBPF15	Q8N660	670 aa		5.36	□□□□□ -1.55
SPG11-223	ENST00000560858	KLRG1	Q96E93	195 aa		5.36	□□□□□ -1.55
SPG11-223	ENST00000560858	SHISA8	B8ZZ34	492 aa		5.35	□□□□□ -1.55
SPG11-223	ENST00000560858	TAS1R3	Q7RTX0	852 aa		5.35	□□□□□ -1.55
SPG11-223	ENST00000560858	GOLGA6L1	Q8N7Z2	621 aa		5.35	□□□□□ -1.55
SPG11-223	ENST00000560858	GRIP2	Q9C0E4	1043 aa		5.35	□□□□□ -1.55
SPG11-223	ENST00000560858	ESF1	Q9H501	851 aa	Known RBP	5.35	□□□□□ -1.55
SPG11-223	ENST00000560858	C1QTNF9B	B2RNN3	333 aa		5.34	□□□□□ -1.55
SPG11-223	ENST00000560858	SPATA31C2	B4DYI2	1134 aa		5.34	□□□□□ -1.55
SPG11-223	ENST00000560858	GNB5	O14775	395 aa		5.34	□□□□□ -1.55
SPG11-223	ENST00000560858	KRTAP9-6	A0A140TA67	174 aa		5.33	□□□□□ -1.56
SPG11-223	ENST00000560858	WASL	O00401	505 aa	Predicted RBP	5.33	□□□□□ -1.56
SPG11-223	ENST00000560858	AP1G2	O75843	785 aa		5.33	□□□□□ -1.56
SPG11-223	ENST00000560858	CLN3	Q13286	438 aa		5.33	□□□□□ -1.56
SPG11-223	ENST00000560858	SKIV2L	Q15477	1246 aa	Known RBP	5.33	□□□□□ -1.56
SPG11-223	ENST00000560858	RNF20	Q5VTR2	975 aa		5.33	□□□□□ -1.56
SPG11-223	ENST00000560858	CC2D2B	Q6DHV5	1058 aa		5.33	□□□□□ -1.56
SPG11-223	ENST00000560858	LINC00114	Q6XXX2	140 aa		5.33	□□□□□ -1.56
SPG11-223	ENST00000560858	SEMA6B	Q9H3T3	888 aa		5.33	□□□□□ -1.56
SPG11-223	ENST00000560858	NOP53	Q9NZM5	478 aa	Known RBP	5.33	□□□□□ -1.56
SPG11-223	ENST00000560858	GIGYF1	O75420	1035 aa	Predicted RBP	5.32	□□□□□ -1.56
SPG11-223	ENST00000560858	CSB-PGBD3	P0DP91	1061 aa		5.32	□□□□□ -1.56
SPG11-223	ENST00000560858	ZMYM1	Q5SVZ6	1142 aa		5.32	□□□□□ -1.56
SPG11-223	ENST00000560858	C1orf229	Q6ZS94	237 aa	Predicted RBP	5.32	□□□□□ -1.56
SPG11-223	ENST00000560858	CYP2U1	Q7Z449	544 aa		5.32	□□□□□ -1.56
SPG11-223	ENST00000560858	CD163	Q86VB7	1156 aa		5.32	□□□□□ -1.56
SPG11-223	ENST00000560858	PGBD3	Q8N328	593 aa		5.32	□□□□□ -1.56
SPG11-223	ENST00000560858	BMP4	P12644	408 aa		5.31	□□□□□ -1.56
SPG11-223	ENST00000560858	ERVK-9	P63128	1117 aa		5.31	□□□□□ -1.56
SPG11-223	ENST00000560858	LBR	Q14739	615 aa	Known RBP	5.31	□□□□□ -1.56
SPG11-223	ENST00000560858	EPS8L1	Q8TE68	723 aa		5.31	□□□□□ -1.56
SPG11-223	ENST00000560858	SUV39H2	Q9H5I1	410 aa		5.31	□□□□□ -1.56
SPG11-223	ENST00000560858		A0A1B0GTH6	734 aa		5.3	□□□□□ -1.56
SPG11-223	ENST00000560858	GTF2E1	P29083	439 aa	Predicted RBP	5.3	□□□□□ -1.56

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