RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 FCHSD2O94868 740 aa12.77□□□□□ -0.37
CUX1-216ENST00000558469 RSPH6AQ9H0K4 717 aa12.77□□□□□ -0.37
CUX1-216ENST00000558469 NCAPD2Q15021 1401 aa12.77□□□□□ -0.37
CUX1-216ENST00000558469 PRKAR2BP31323 418 aa12.76□□□□□ -0.37
CUX1-216ENST00000558469 VPS72Q15906 364 aa12.76□□□□□ -0.37
CUX1-216ENST00000558469 CCDC146Q8IYE0 955 aa12.76□□□□□ -0.37
CUX1-216ENST00000558469 PNNQ9H307 717 aaKnown RBP12.76□□□□□ -0.37
CUX1-216ENST00000558469 KDRP35968 1356 aa12.76□□□□□ -0.37
CUX1-216ENST00000558469 VIRMAQ69YN4 1812 aaKnown RBP12.76□□□□□ -0.37
CUX1-216ENST00000558469 SPATA31A1Q5TZJ5 1347 aa12.75□□□□□ -0.37
CUX1-216ENST00000558469 SPATA31A5Q5VU36 1347 aa12.75□□□□□ -0.37
CUX1-216ENST00000558469 SPATA31A7Q8IWB4 1347 aa12.75□□□□□ -0.37
CUX1-216ENST00000558469 RAPGEF4Q8WZA2 1011 aa12.74□□□□□ -0.37
CUX1-216ENST00000558469 RUNDC1Q96C34 613 aa12.74□□□□□ -0.37
CUX1-216ENST00000558469 PLEKHF1Q96S99 279 aa12.74□□□□□ -0.37
CUX1-216ENST00000558469 QTRT2Q9H974 415 aaKnown RBP12.74□□□□□ -0.37
CUX1-216ENST00000558469 ATRNO75882 1429 aa12.73□□□□□ -0.37
CUX1-216ENST00000558469 MAPK8IP3Q9UPT6 1336 aa12.73□□□□□ -0.37
CUX1-216ENST00000558469 NEFMP07197 916 aa12.73□□□□□ -0.37
CUX1-216ENST00000558469 TATP17735 454 aaPredicted RBP12.73□□□□□ -0.37
CUX1-216ENST00000558469 POLA2Q14181 598 aa12.73□□□□□ -0.37
CUX1-216ENST00000558469 ZNF772Q68DY9 489 aaPredicted RBP12.73□□□□□ -0.37
CUX1-216ENST00000558469 TCP11L2Q8N4U5 519 aa12.73□□□□□ -0.37
CUX1-216ENST00000558469 PHACTR3Q96KR7 559 aa12.73□□□□□ -0.37
CUX1-216ENST00000558469 TRPC5Q9UL62 973 aaPredicted RBP12.73□□□□□ -0.37
CUX1-216ENST00000558469 PKD1L3Q7Z443 1732 aa12.73□□□□□ -0.37
CUX1-216ENST00000558469 GLI3P10071 1580 aa12.73□□□□□ -0.37
CUX1-216ENST00000558469 MEGF6O75095 1541 aa12.72□□□□□ -0.37
CUX1-216ENST00000558469 SHANK3Q9BYB0 1731 aa12.72□□□□□ -0.37
CUX1-216ENST00000558469 SENP3-EIF4A1A0A087X0R7 540 aa12.72□□□□□ -0.37
CUX1-216ENST00000558469 IL2RBP14784 551 aa12.72□□□□□ -0.37
CUX1-216ENST00000558469 THRAP3Q9Y2W1 955 aaKnown RBP12.72□□□□□ -0.37
CUX1-216ENST00000558469 GJD4Q96KN9 370 aaPredicted RBP12.71□□□□□ -0.37
CUX1-216ENST00000558469 APAF1O14727 1248 aa12.7□□□□□ -0.38
CUX1-216ENST00000558469 ATXN8OSP0DMR3 200 aa12.7□□□□□ -0.38
CUX1-216ENST00000558469 FAM98CQ17RN3 349 aaKnown RBP12.7□□□□□ -0.38
CUX1-216ENST00000558469 OVOS2A0A0G2JMS6 1433 aa12.7□□□□□ -0.38
CUX1-216ENST00000558469 NEUROD2Q15784 382 aa12.69□□□□□ -0.38
CUX1-216ENST00000558469 PLEKHO1Q53GL0 409 aaPredicted RBP12.69□□□□□ -0.38
CUX1-216ENST00000558469 BARGINQ6ZT62 677 aa12.69□□□□□ -0.38
CUX1-216ENST00000558469 RGS17Q9UGC6 210 aaPredicted RBP12.69□□□□□ -0.38
CUX1-216ENST00000558469 KAT6BQ8WYB5 2073 aa12.69□□□□□ -0.38
CUX1-216ENST00000558469 DISP2A7MBM2 1401 aa12.69□□□□□ -0.38
CUX1-216ENST00000558469 LRRC37A3O60309 1634 aa12.69□□□□□ -0.38
CUX1-216ENST00000558469 BRWD3Q6RI45 1802 aa12.69□□□□□ -0.38
CUX1-216ENST00000558469 THSD7AQ9UPZ6 1657 aa12.68□□□□□ -0.38
CUX1-216ENST00000558469 MTHFSDQ2M296 383 aaKnown RBP12.68□□□□□ -0.38
CUX1-216ENST00000558469 AMOTQ4VCS5 1084 aa12.68□□□□□ -0.38
CUX1-216ENST00000558469 YTHDC1Q96MU7 727 aaKnown RBP12.68□□□□□ -0.38
CUX1-216ENST00000558469 CDCA7Q9BWT1 371 aaPredicted RBP12.68□□□□□ -0.38
CUX1-216ENST00000558469 SPG7Q9UQ90 795 aa12.68□□□□□ -0.38
CUX1-216ENST00000558469 RRP7AQ9Y3A4 280 aaKnown RBP12.68□□□□□ -0.38
CUX1-216ENST00000558469 SCN11AQ9UI33 1791 aa12.67□□□□□ -0.38
CUX1-216ENST00000558469 A0A0G2JS52 829 aa12.67□□□□□ -0.38
CUX1-216ENST00000558469 TMPOP42166 694 aaKnown RBP12.67□□□□□ -0.38
CUX1-216ENST00000558469 RIPK4P57078 832 aa12.67□□□□□ -0.38
CUX1-216ENST00000558469 HNRNPUQ00839 825 aaKnown RBP eCLIP12.67□□□□□ -0.38
CUX1-216ENST00000558469 MYT1Q01538 1121 aa12.67□□□□□ -0.38
CUX1-216ENST00000558469 NFE2L2Q16236 605 aa12.67□□□□□ -0.38
CUX1-216ENST00000558469 GAS2L2Q8NHY3 880 aa12.67□□□□□ -0.38
CUX1-216ENST00000558469 ZCRB1Q8TBF4 217 aaKnown RBP12.67□□□□□ -0.38
CUX1-216ENST00000558469 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.67□□□□□ -0.387e-7■□□□□ 11.2
CUX1-216ENST00000558469 SALL2Q9Y467 1007 aaPredicted RBP12.67□□□□□ -0.38
CUX1-216ENST00000558469 PLEKHG2Q9H7P9 1386 aa12.67□□□□□ -0.38
CUX1-216ENST00000558469 EXOC5O00471 708 aa12.66□□□□□ -0.38
CUX1-216ENST00000558469 RBM6P78332 1123 aaKnown RBP12.66□□□□□ -0.38
CUX1-216ENST00000558469 ZNF530Q6P9A1 599 aaPredicted RBP12.66□□□□□ -0.38
CUX1-216ENST00000558469 RXRBP28702 533 aa12.65□□□□□ -0.38
CUX1-216ENST00000558469 DDB1Q16531 1140 aa12.65□□□□□ -0.38
CUX1-216ENST00000558469 C1orf141Q5JVX7 400 aa12.65□□□□□ -0.38
CUX1-216ENST00000558469 POTEAQ6S8J7 498 aa12.65□□□□□ -0.38
CUX1-216ENST00000558469 DDX54Q8TDD1 881 aaKnown RBP12.65□□□□□ -0.38
CUX1-216ENST00000558469 PCDH11XQ9BZA7 1347 aa12.64□□□□□ -0.39
CUX1-216ENST00000558469 PCDH11YQ9BZA8 1340 aa12.64□□□□□ -0.39
CUX1-216ENST00000558469 TNS2Q63HR2 1409 aa12.64□□□□□ -0.39
CUX1-216ENST00000558469 GNAT3A8MTJ3 354 aa12.64□□□□□ -0.39
CUX1-216ENST00000558469 ONECUT3O60422 494 aaPredicted RBP12.64□□□□□ -0.39
CUX1-216ENST00000558469 AKAP4Q5JQC9 854 aa12.64□□□□□ -0.39
CUX1-216ENST00000558469 ITGB4P16144 1822 aa12.63□□□□□ -0.39
CUX1-216ENST00000558469 CYP27B1O15528 508 aa12.63□□□□□ -0.39
CUX1-216ENST00000558469 PHKG2P15735 406 aa12.63□□□□□ -0.39
CUX1-216ENST00000558469 SEPT12Q8IYM1 358 aa12.63□□□□□ -0.39
CUX1-216ENST00000558469 IFNL2Q8IZJ0 200 aa12.63□□□□□ -0.39
CUX1-216ENST00000558469 MAP3K5Q99683 1374 aa12.63□□□□□ -0.39
CUX1-216ENST00000558469 RTF1Q92541 710 aaKnown RBP12.62□□□□□ -0.39
CUX1-216ENST00000558469 TRIM35Q9UPQ4 493 aa12.62□□□□□ -0.39
CUX1-216ENST00000558469 SIPA1L3O60292 1781 aaPredicted RBP12.61□□□□□ -0.39
CUX1-216ENST00000558469 ADAMTS7Q9UKP4 1686 aa12.61□□□□□ -0.39
CUX1-216ENST00000558469 SBF2Q86WG5 1849 aa12.61□□□□□ -0.39
CUX1-216ENST00000558469 LMOD3Q0VAK6 560 aa12.61□□□□□ -0.39
CUX1-216ENST00000558469 PDE3BQ13370 1112 aa12.61□□□□□ -0.39
CUX1-216ENST00000558469 DCTN1Q14203 1278 aa12.61□□□□□ -0.39
CUX1-216ENST00000558469 MPRIPQ6WCQ1 1025 aa12.61□□□□□ -0.39
CUX1-216ENST00000558469 MCM10Q7L590 875 aa12.61□□□□□ -0.39
CUX1-216ENST00000558469 NGEFQ8N5V2 710 aa12.61□□□□□ -0.39
CUX1-216ENST00000558469 DOT1LQ8TEK3 1739 aa12.61□□□□□ -0.39
CUX1-216ENST00000558469 TOGARAM1Q9Y4F4 1720 aa12.61□□□□□ -0.39
CUX1-216ENST00000558469 HTATSF1O43719 755 aaKnown RBP12.6□□□□□ -0.39
CUX1-216ENST00000558469 CCDC27Q2M243 656 aa12.6□□□□□ -0.39
CUX1-216ENST00000558469 WWC1Q8IX03 1113 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 146 ms