RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 CENPQQ7L2Z9 268 aaPredicted RBP21.6■■□□□ 1.05
LDLR-206ENST00000557958 BCL2L13Q9BXK5 485 aa21.59■■□□□ 1.05
LDLR-206ENST00000557958 DLG5Q8TDM6 1919 aa21.59■■□□□ 1.05
LDLR-206ENST00000557958 ZNF853P0CG23 659 aa21.58■■□□□ 1.05
LDLR-206ENST00000557958 GAS2L2Q8NHY3 880 aa21.58■■□□□ 1.04
LDLR-206ENST00000557958 NLRP2Q9NX02 1062 aa21.58■■□□□ 1.04
LDLR-206ENST00000557958 AHDC1Q5TGY3 1603 aaPredicted RBP21.58■■□□□ 1.04
LDLR-206ENST00000557958 IPO8O15397 1037 aaKnown RBP21.57■■□□□ 1.04
LDLR-206ENST00000557958 FTSJ3Q8IY81 847 aaKnown RBP21.57■■□□□ 1.04
LDLR-206ENST00000557958 THUMPD2Q9BTF0 503 aaKnown RBP21.57■■□□□ 1.04
LDLR-206ENST00000557958 ANP32EQ9BTT0 268 aa21.57■■□□□ 1.04
LDLR-206ENST00000557958 PHLPP1O60346 1717 aa21.57■■□□□ 1.04
LDLR-206ENST00000557958 NUTM2BA6NNL0 878 aaPredicted RBP21.56■■□□□ 1.04
LDLR-206ENST00000557958 NUTM2EB1AL46 878 aaPredicted RBP21.56■■□□□ 1.04
LDLR-206ENST00000557958 NUTM2AQ8IVF1 878 aaPredicted RBP21.56■■□□□ 1.04
LDLR-206ENST00000557958 PANK1Q8TE04 598 aa21.56■■□□□ 1.04
LDLR-206ENST00000557958 SSH1Q8WYL5 1049 aa21.56■■□□□ 1.04
LDLR-206ENST00000557958 RTF1Q92541 710 aaKnown RBP21.55■■□□□ 1.04
LDLR-206ENST00000557958 CLUAP1Q96AJ1 413 aa21.55■■□□□ 1.04
LDLR-206ENST00000557958 MBIPQ9NS73 344 aa21.55■■□□□ 1.04
LDLR-206ENST00000557958 COG6Q9Y2V7 657 aa21.55■■□□□ 1.04
LDLR-206ENST00000557958 RBM19Q9Y4C8 960 aaKnown RBP21.55■■□□□ 1.04
LDLR-206ENST00000557958 CPDO75976 1380 aa21.55■■□□□ 1.04
LDLR-206ENST00000557958 FAM83GA6ND36 823 aa21.54■■□□□ 1.04
LDLR-206ENST00000557958 ERBB3P21860 1342 aa21.54■■□□□ 1.04
LDLR-206ENST00000557958 TCERG1O14776 1098 aaKnown RBP21.54■■□□□ 1.04
LDLR-206ENST00000557958 DZIP1LQ8IYY4 767 aaKnown RBP21.54■■□□□ 1.04
LDLR-206ENST00000557958 KDM2BQ8NHM5 1336 aa21.53■■□□□ 1.04
LDLR-206ENST00000557958 ADAMTS2O95450 1211 aa21.53■■□□□ 1.04
LDLR-206ENST00000557958 BRPF1P55201 1214 aaPredicted RBP21.53■■□□□ 1.04
LDLR-206ENST00000557958 EVA1CP58658 441 aa21.53■■□□□ 1.04
LDLR-206ENST00000557958 STRN4Q9NRL3 753 aa21.53■■□□□ 1.04
LDLR-206ENST00000557958 CRYBG1Q9Y4K1 1723 aa21.53■■□□□ 1.04
LDLR-206ENST00000557958 HTATSF1O43719 755 aaKnown RBP21.52■■□□□ 1.04
LDLR-206ENST00000557958 RGPD5Q99666 1765 aa21.52■■□□□ 1.03
LDLR-206ENST00000557958 MTHFSDQ2M296 383 aaKnown RBP21.52■■□□□ 1.03
LDLR-206ENST00000557958 ATF7IPQ6VMQ6 1270 aa21.52■■□□□ 1.03
LDLR-206ENST00000557958 MVPQ14764 893 aaKnown RBP21.5■■□□□ 1.03
LDLR-206ENST00000557958 DCTN1Q14203 1278 aa21.49■■□□□ 1.03
LDLR-206ENST00000557958 TOM1L2Q6ZVM7 507 aa21.49■■□□□ 1.03
LDLR-206ENST00000557958 VAMP4O75379 141 aa21.49■■□□□ 1.03
LDLR-206ENST00000557958 TWISTNBQ3B726 338 aaPredicted RBP21.49■■□□□ 1.03
LDLR-206ENST00000557958 COL16A1Q07092 1604 aaPredicted RBP21.49■■□□□ 1.03
LDLR-206ENST00000557958 RLBP1P12271 317 aa21.48■■□□□ 1.03
LDLR-206ENST00000557958 TRIM27P14373 513 aa21.48■■□□□ 1.03
LDLR-206ENST00000557958 BTG4Q9NY30 223 aa21.48■■□□□ 1.03
LDLR-206ENST00000557958 NOB1Q9ULX3 412 aaKnown RBP21.48■■□□□ 1.03
LDLR-206ENST00000557958 RGPD2P0DJD1 1756 aa21.48■■□□□ 1.03
LDLR-206ENST00000557958 CHL1O00533 1208 aa21.47■■□□□ 1.03
LDLR-206ENST00000557958 MCM10Q7L590 875 aa21.47■■□□□ 1.03
LDLR-206ENST00000557958 DDX19BQ9UMR2 479 aa21.47■■□□□ 1.03
LDLR-206ENST00000557958 ARHGAP45Q92619 1136 aa21.46■■□□□ 1.03
LDLR-206ENST00000557958 COL18A1P39060 1754 aa21.46■■□□□ 1.03
LDLR-206ENST00000557958 ABCA3Q99758 1704 aa21.46■■□□□ 1.03
LDLR-206ENST00000557958 GNAT3A8MTJ3 354 aa21.45■■□□□ 1.02
LDLR-206ENST00000557958 RAPGEF4Q8WZA2 1011 aa21.45■■□□□ 1.02
LDLR-206ENST00000557958 USP35Q9P2H5 1018 aa21.45■■□□□ 1.02
LDLR-206ENST00000557958 CRB1P82279 1406 aa21.45■■□□□ 1.02
LDLR-206ENST00000557958 CAMTA1Q9Y6Y1 1673 aa21.45■■□□□ 1.02
LDLR-206ENST00000557958 CHMP4BQ9H444 224 aaKnown RBP21.45■■□□□ 1.02
LDLR-206ENST00000557958 LARP1Q6PKG0 1096 aaKnown RBP21.44■■□□□ 1.02
LDLR-206ENST00000557958 MAP3K5Q99683 1374 aa21.44■■□□□ 1.02
LDLR-206ENST00000557958 HSPA1LP34931 641 aa21.43■■□□□ 1.02
LDLR-206ENST00000557958 PLEKHO1Q53GL0 409 aaPredicted RBP21.43■■□□□ 1.02
LDLR-206ENST00000557958 TSPYL6Q8N831 410 aa21.43■■□□□ 1.02
LDLR-206ENST00000557958 ITPRIPQ8IWB1 547 aa21.43■■□□□ 1.02
LDLR-206ENST00000557958 TNNQ9UQP3 1299 aa21.43■■□□□ 1.02
LDLR-206ENST00000557958 WDR17Q8IZU2 1322 aa21.42■■□□□ 1.02
LDLR-206ENST00000557958 MRPL50Q8N5N7 158 aaKnown RBP21.42■■□□□ 1.02
LDLR-206ENST00000557958 C8orf58Q8NAV2 365 aa21.42■■□□□ 1.02
LDLR-206ENST00000557958 TATP17735 454 aaPredicted RBP21.41■■□□□ 1.02
LDLR-206ENST00000557958 ELL2O00472 640 aaPredicted RBP21.41■■□□□ 1.02
LDLR-206ENST00000557958 ZNF530Q6P9A1 599 aaPredicted RBP21.41■■□□□ 1.02
LDLR-206ENST00000557958 COL5A2P05997 1499 aaPredicted RBP21.4■■□□□ 1.02
LDLR-206ENST00000557958 COL22A1Q8NFW1 1626 aaPredicted RBP21.4■■□□□ 1.02
LDLR-206ENST00000557958 RWDD1Q9H446 243 aaPredicted RBP21.4■■□□□ 1.02
LDLR-206ENST00000557958 BABAM1Q9NWV8 329 aa21.4■■□□□ 1.02
LDLR-206ENST00000557958 TSPYL4Q9UJ04 414 aa21.4■■□□□ 1.02
LDLR-206ENST00000557958 LRRC37A3O60309 1634 aa21.39■■□□□ 1.02
LDLR-206ENST00000557958 JCADQ9P266 1359 aa21.39■■□□□ 1.02
LDLR-206ENST00000557958 ABCC6O95255 1503 aa21.39■■□□□ 1.01
LDLR-206ENST00000557958 AMOTQ4VCS5 1084 aa21.39■■□□□ 1.01
LDLR-206ENST00000557958 API5Q9BZZ5 524 aaKnown RBP21.39■■□□□ 1.01
LDLR-206ENST00000557958 NCAPD2Q15021 1401 aa21.38■■□□□ 1.01
LDLR-206ENST00000557958 C1orf141Q5JVX7 400 aa21.38■■□□□ 1.01
LDLR-206ENST00000557958 LMO7Q8WWI1 1683 aa21.37■■□□□ 1.01
LDLR-206ENST00000557958 TMEM57Q8N5G2 664 aa21.37■■□□□ 1.01
LDLR-206ENST00000557958 SOS1Q07889 1333 aaPredicted RBP21.36■■□□□ 1.01
LDLR-206ENST00000557958 C8orf37Q96NL8 207 aa21.36■■□□□ 1.01
LDLR-206ENST00000557958 IGHDP01880 384 aa21.35■■□□□ 1.01
LDLR-206ENST00000557958 CARD10Q9BWT7 1032 aa21.35■■□□□ 1.01
LDLR-206ENST00000557958 MPRIPQ6WCQ1 1025 aa21.35■■□□□ 1.01
LDLR-206ENST00000557958 MIS18AQ9NYP9 233 aa21.35■■□□□ 1.01
LDLR-206ENST00000557958 SPG7Q9UQ90 795 aa21.35■■□□□ 1.01
LDLR-206ENST00000557958 NGLY1Q96IV0 654 aa21.34■■□□□ 1.01
LDLR-206ENST00000557958 PCDHB15Q9Y5E8 787 aa21.34■■□□□ 1.01
LDLR-206ENST00000557958 AKAP4Q5JQC9 854 aa21.33■■□□□ 1.01
LDLR-206ENST00000557958 IL17REQ8NFR9 667 aa21.33■■□□□ 1.01
LDLR-206ENST00000557958 LGR6Q9HBX8 967 aa21.33■■□□□ 1.01
LDLR-206ENST00000557958 CCDC9Q9Y3X0 531 aaKnown RBP21.33■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms