RNA–Protein interactions for RNA: ENST00000557222.5

VRK1-206, Transcript of vaccinia related kinase 1, humanhuman

TSL 5

Gene VRK1, Length 1,029 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-206ENST00000557222 HS3ST6Q96QI5 342 aa12.59□□□□□ -0.39
VRK1-206ENST00000557222 CDK19Q9BWU1 502 aa12.59□□□□□ -0.39
VRK1-206ENST00000557222 CRYBG1Q9Y4K1 1723 aa12.59□□□□□ -0.39
VRK1-206ENST00000557222 SPATA31A1Q5TZJ5 1347 aa12.59□□□□□ -0.39
VRK1-206ENST00000557222 NBPF8Q3BBV2 869 aa12.58□□□□□ -0.4
VRK1-206ENST00000557222 ARHGEF28Q8N1W1 1705 aaKnown RBP12.58□□□□□ -0.4
VRK1-206ENST00000557222 LRP5O75197 1615 aa12.58□□□□□ -0.4
VRK1-206ENST00000557222 THSD7AQ9UPZ6 1657 aa12.57□□□□□ -0.4
VRK1-206ENST00000557222 BRD4O60885 1362 aaPredicted RBP12.57□□□□□ -0.4
VRK1-206ENST00000557222 KIAA0232Q92628 1395 aa12.57□□□□□ -0.4
VRK1-206ENST00000557222 ARSIQ5FYB1 569 aa12.57□□□□□ -0.4
VRK1-206ENST00000557222 FAM196AQ6ZSG2 479 aa12.57□□□□□ -0.4
VRK1-206ENST00000557222 BARGINQ6ZT62 677 aa12.57□□□□□ -0.4
VRK1-206ENST00000557222 BBXQ8WY36 941 aaPredicted RBP12.57□□□□□ -0.4
VRK1-206ENST00000557222 ACEP12821 1306 aa12.57□□□□□ -0.4
VRK1-206ENST00000557222 KIAA1210Q9ULL0 1709 aa12.57□□□□□ -0.4
VRK1-206ENST00000557222 FOXK1P85037 733 aa12.56□□□□□ -0.4
VRK1-206ENST00000557222 PLSCR2Q9NRY7 297 aa12.56□□□□□ -0.4
VRK1-206ENST00000557222 RGPD1P0DJD0 1748 aa12.56□□□□□ -0.4
VRK1-206ENST00000557222 CPDO75976 1380 aa12.56□□□□□ -0.4
VRK1-206ENST00000557222 SLC34A2O95436 690 aa12.55□□□□□ -0.4
VRK1-206ENST00000557222 EN1Q05925 392 aaPredicted RBP12.55□□□□□ -0.4
VRK1-206ENST00000557222 PARD3Q8TEW0 1356 aa12.55□□□□□ -0.4
VRK1-206ENST00000557222 C11orf95C9JLR9 678 aaPredicted RBP12.54□□□□□ -0.4
VRK1-206ENST00000557222 EVA1CP58658 441 aa12.54□□□□□ -0.4
VRK1-206ENST00000557222 NLRP13Q86W25 1043 aa12.54□□□□□ -0.4
VRK1-206ENST00000557222 KHSRPQ92945 711 aaKnown RBP eCLIP12.54□□□□□ -0.42e-7■■□□□ 14.1
VRK1-206ENST00000557222 THRAP3Q9Y2W1 955 aaKnown RBP12.54□□□□□ -0.4
VRK1-206ENST00000557222 USP19O94966 1318 aa12.54□□□□□ -0.4
VRK1-206ENST00000557222 ERBB3P21860 1342 aa12.54□□□□□ -0.4
VRK1-206ENST00000557222 ZC3H6P61129 1189 aaKnown RBP12.53□□□□□ -0.4
VRK1-206ENST00000557222 DSG2Q14126 1118 aa12.53□□□□□ -0.4
VRK1-206ENST00000557222 CHRNA2Q15822 529 aa12.53□□□□□ -0.4
VRK1-206ENST00000557222 PLPP6Q8IY26 295 aa12.53□□□□□ -0.4
VRK1-206ENST00000557222 ABTB2Q8N961 1025 aa12.53□□□□□ -0.4
VRK1-206ENST00000557222 CAMKK2Q96RR4 588 aa12.53□□□□□ -0.4
VRK1-206ENST00000557222 STRN4Q9NRL3 753 aa12.53□□□□□ -0.4
VRK1-206ENST00000557222 TOPAZ1Q8N9V7 1692 aa12.53□□□□□ -0.4
VRK1-206ENST00000557222 PHRF1Q9P1Y6 1649 aaKnown RBP12.52□□□□□ -0.4
VRK1-206ENST00000557222 TCP11L2Q8N4U5 519 aa12.52□□□□□ -0.41
VRK1-206ENST00000557222 CRISPLD2Q9H0B8 497 aa12.52□□□□□ -0.41
VRK1-206ENST00000557222 SSH2Q76I76 1423 aa12.52□□□□□ -0.41
VRK1-206ENST00000557222 PSDA5PKW4 1024 aaPredicted RBP12.51□□□□□ -0.41
VRK1-206ENST00000557222 PDE3BQ13370 1112 aa12.51□□□□□ -0.41
VRK1-206ENST00000557222 FAM182BQ5T319 152 aa12.51□□□□□ -0.41
VRK1-206ENST00000557222 CENPJQ9HC77 1338 aaPredicted RBP12.51□□□□□ -0.41
VRK1-206ENST00000557222 TRIM37O94972 964 aa12.5□□□□□ -0.41
VRK1-206ENST00000557222 GCP02774 474 aa12.5□□□□□ -0.41
VRK1-206ENST00000557222 EZH2Q15910 746 aaKnown RBP12.5□□□□□ -0.41
VRK1-206ENST00000557222 NBPF1Q3BBV0 1214 aa12.5□□□□□ -0.41
VRK1-206ENST00000557222 NUTM2GQ5VZR2 741 aa12.5□□□□□ -0.41
VRK1-206ENST00000557222 PCDHGA4Q9Y5G9 962 aa12.5□□□□□ -0.41
VRK1-206ENST00000557222 TNS1Q9HBL0 1735 aaKnown RBP12.49□□□□□ -0.41
VRK1-206ENST00000557222 CAMTA1Q9Y6Y1 1673 aa12.49□□□□□ -0.41
VRK1-206ENST00000557222 APBA3O96018 575 aa12.49□□□□□ -0.41
VRK1-206ENST00000557222 SRPK2P78362 688 aaKnown RBP12.49□□□□□ -0.41
VRK1-206ENST00000557222 R3HDM1Q15032 1099 aaKnown RBP12.49□□□□□ -0.41
VRK1-206ENST00000557222 NRKQ7Z2Y5 1582 aa12.48□□□□□ -0.41
VRK1-206ENST00000557222 PPIP5K1Q6PFW1 1433 aa12.48□□□□□ -0.41
VRK1-206ENST00000557222 VARS2Q5ST30 1063 aaKnown RBP12.48□□□□□ -0.41
VRK1-206ENST00000557222 LARP1Q6PKG0 1096 aaKnown RBP12.48□□□□□ -0.41
VRK1-206ENST00000557222 LMO7Q8WWI1 1683 aa12.48□□□□□ -0.41
VRK1-206ENST00000557222 AATKQ6ZMQ8 1374 aa12.47□□□□□ -0.41
VRK1-206ENST00000557222 PDE4AP27815 886 aa12.47□□□□□ -0.41
VRK1-206ENST00000557222 USP35Q9P2H5 1018 aa12.47□□□□□ -0.41
VRK1-206ENST00000557222 NBPF14Q5TI25 921 aa12.46□□□□□ -0.41
VRK1-206ENST00000557222 CABP1Q9NZU7 370 aa12.46□□□□□ -0.41
VRK1-206ENST00000557222 USP6P35125 1406 aa12.45□□□□□ -0.42
VRK1-206ENST00000557222 CRB1P82279 1406 aa12.45□□□□□ -0.42
VRK1-206ENST00000557222 NUDT7P0C024 238 aa12.45□□□□□ -0.42
VRK1-206ENST00000557222 PTCD2Q8WV60 388 aaKnown RBP12.45□□□□□ -0.42
VRK1-206ENST00000557222 COL5A2P05997 1499 aaPredicted RBP12.45□□□□□ -0.42
VRK1-206ENST00000557222 EVC2Q86UK5 1308 aa12.44□□□□□ -0.42
VRK1-206ENST00000557222 ZNF316A6NFI3 1004 aaPredicted RBP12.44□□□□□ -0.42
VRK1-206ENST00000557222 CDCA7Q9BWT1 371 aaPredicted RBP12.44□□□□□ -0.42
VRK1-206ENST00000557222 KRTAP3-3Q9BYR6 98 aa12.44□□□□□ -0.42
VRK1-206ENST00000557222 KRTAP3-2Q9BYR7 98 aa12.44□□□□□ -0.42
VRK1-206ENST00000557222 SLIT3O75094 1523 aa12.43□□□□□ -0.42
VRK1-206ENST00000557222 PARP4Q9UKK3 1724 aaKnown RBP12.43□□□□□ -0.42
VRK1-206ENST00000557222 PLSCR1O15162 318 aa12.43□□□□□ -0.42
VRK1-206ENST00000557222 PPP1R15BQ5SWA1 713 aa12.43□□□□□ -0.42
VRK1-206ENST00000557222 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.43□□□□□ -0.42
VRK1-206ENST00000557222 SPRYD3Q8NCJ5 442 aa12.42□□□□□ -0.42
VRK1-206ENST00000557222 KCNH5Q8NCM2 988 aa12.42□□□□□ -0.42
VRK1-206ENST00000557222 L3MBTL2Q969R5 705 aa12.42□□□□□ -0.42
VRK1-206ENST00000557222 LARP6Q9BRS8 491 aaKnown RBP12.42□□□□□ -0.42
VRK1-206ENST00000557222 RREB1Q92766 1687 aa12.42□□□□□ -0.42
VRK1-206ENST00000557222 OVOS2A0A0G2JMS6 1433 aa12.41□□□□□ -0.42
VRK1-206ENST00000557222 OVOS2A0A0J9YW53 1432 aa12.41□□□□□ -0.42
VRK1-206ENST00000557222 BCL9O00512 1426 aa12.41□□□□□ -0.42
VRK1-206ENST00000557222 OVOS2Q6IE36 1432 aa12.41□□□□□ -0.42
VRK1-206ENST00000557222 WDR17Q8IZU2 1322 aa12.4□□□□□ -0.42
VRK1-206ENST00000557222 TTC21AQ8NDW8 1320 aa12.4□□□□□ -0.42
VRK1-206ENST00000557222 DDB1Q16531 1140 aa12.4□□□□□ -0.42
VRK1-206ENST00000557222 ARHGEF25Q86VW2 580 aa12.4□□□□□ -0.42
VRK1-206ENST00000557222 QRICH2Q9H0J4 1663 aa12.4□□□□□ -0.42
VRK1-206ENST00000557222 TOM1L2Q6ZVM7 507 aa12.39□□□□□ -0.43
VRK1-206ENST00000557222 ZNF687Q8N1G0 1237 aa12.39□□□□□ -0.43
VRK1-206ENST00000557222 CARD10Q9BWT7 1032 aa12.39□□□□□ -0.43
VRK1-206ENST00000557222 TTC21BQ7Z4L5 1316 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms