RNA–Protein interactions for RNA: ENST00000555221.3

CKS1BP1-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 1, humanhuman

BASIC

Gene CKS1BP1, Length 240 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP1-201ENST00000555221 CARNS1A5YM72 827 aa9.72□□□□□ -0.85
CKS1BP1-201ENST00000555221 SIAH2O43255 324 aa9.72□□□□□ -0.85
CKS1BP1-201ENST00000555221 PSME1Q06323 249 aa9.72□□□□□ -0.85
CKS1BP1-201ENST00000555221 DPYDQ12882 1025 aa9.72□□□□□ -0.85
CKS1BP1-201ENST00000555221 NR5A1Q13285 461 aa9.72□□□□□ -0.85
CKS1BP1-201ENST00000555221 SPRYD7Q5W111 196 aa9.72□□□□□ -0.85
CKS1BP1-201ENST00000555221 PLA2G2EQ9NZK7 142 aa9.72□□□□□ -0.85
CKS1BP1-201ENST00000555221 TLL2Q9Y6L7 1015 aa9.72□□□□□ -0.85
CKS1BP1-201ENST00000555221 ADH1CP00326 375 aa9.71□□□□□ -0.86
CKS1BP1-201ENST00000555221 GRM5P41594 1212 aa9.71□□□□□ -0.86
CKS1BP1-201ENST00000555221 MRGPRX2Q96LB1 330 aa9.71□□□□□ -0.86
CKS1BP1-201ENST00000555221 A0A0G2JS52 829 aa9.7□□□□□ -0.86
CKS1BP1-201ENST00000555221 ZBTB7BO15156 539 aaPredicted RBP9.7□□□□□ -0.86
CKS1BP1-201ENST00000555221 SEC13P55735 322 aa9.7□□□□□ -0.86
CKS1BP1-201ENST00000555221 SWI5Q1ZZU3 235 aa9.7□□□□□ -0.86
CKS1BP1-201ENST00000555221 CCDC102BQ68D86 513 aa9.7□□□□□ -0.86
CKS1BP1-201ENST00000555221 CC2D2BQ6DHV5 1058 aa9.7□□□□□ -0.86
CKS1BP1-201ENST00000555221 PCDHGA11Q9Y5H2 935 aa9.7□□□□□ -0.86
CKS1BP1-201ENST00000555221 ERVK-9P63128 1117 aa9.69□□□□□ -0.86
CKS1BP1-201ENST00000555221 CCDC116Q8IYX3 515 aa9.69□□□□□ -0.86
CKS1BP1-201ENST00000555221 TPCN2Q8NHX9 752 aa9.69□□□□□ -0.86
CKS1BP1-201ENST00000555221 KIAA1024Q9UPX6 916 aa9.69□□□□□ -0.86
CKS1BP1-201ENST00000555221 ZNF697Q5TEC3 545 aa9.68□□□□□ -0.86
CKS1BP1-201ENST00000555221 ZNF598Q86UK7 904 aaKnown RBP9.68□□□□□ -0.86
CKS1BP1-201ENST00000555221 CLP1Q92989 425 aaKnown RBP9.68□□□□□ -0.86
CKS1BP1-201ENST00000555221 DKK1O94907 266 aa9.67□□□□□ -0.86
CKS1BP1-201ENST00000555221 FAM69CQ0P6D2 419 aa9.67□□□□□ -0.86
CKS1BP1-201ENST00000555221 V9GY48 417 aaPredicted RBP9.67□□□□□ -0.86
CKS1BP1-201ENST00000555221 SCTRP47872 440 aa9.66□□□□□ -0.86
CKS1BP1-201ENST00000555221 MYT1Q01538 1121 aa9.66□□□□□ -0.86
CKS1BP1-201ENST00000555221 PPP1R26Q5T8A7 1209 aaPredicted RBP9.66□□□□□ -0.86
CKS1BP1-201ENST00000555221 PGPEP1Q9NXJ5 209 aa9.66□□□□□ -0.86
CKS1BP1-201ENST00000555221 ZNF784Q8NCA9 323 aaPredicted RBP9.65□□□□□ -0.86
CKS1BP1-201ENST00000555221 PRKD2Q9BZL6 878 aa9.65□□□□□ -0.86
CKS1BP1-201ENST00000555221 CYLDQ9NQC7 956 aa9.65□□□□□ -0.86
CKS1BP1-201ENST00000555221 TMPRSS4Q9NRS4 437 aa9.65□□□□□ -0.86
CKS1BP1-201ENST00000555221 EMILIN1Q9Y6C2 1016 aa9.65□□□□□ -0.86
CKS1BP1-201ENST00000555221 M0R2N6 131 aa9.64□□□□□ -0.87
CKS1BP1-201ENST00000555221 FOXC1Q12948 553 aa9.64□□□□□ -0.87
CKS1BP1-201ENST00000555221 WASF2Q9Y6W5 498 aa9.64□□□□□ -0.87
CKS1BP1-201ENST00000555221 SFI1A8K8P3 1242 aa9.63□□□□□ -0.87
CKS1BP1-201ENST00000555221 ALDH1A1P00352 501 aa9.63□□□□□ -0.87
CKS1BP1-201ENST00000555221 ATP2B4P23634 1241 aa9.63□□□□□ -0.87
CKS1BP1-201ENST00000555221 SSFA2P28290 1259 aa9.63□□□□□ -0.87
CKS1BP1-201ENST00000555221 CYP2U1Q7Z449 544 aa9.63□□□□□ -0.87
CKS1BP1-201ENST00000555221 SNIP1Q8TAD8 396 aaKnown RBP9.63□□□□□ -0.87
CKS1BP1-201ENST00000555221 OSBPL3Q9H4L5 887 aa9.63□□□□□ -0.87
CKS1BP1-201ENST00000555221 CCDC9Q9Y3X0 531 aaKnown RBP9.63□□□□□ -0.87
CKS1BP1-201ENST00000555221 GZF1Q9H116 711 aaPredicted RBP9.62□□□□□ -0.87
CKS1BP1-201ENST00000555221 PKD2L1Q9P0L9 805 aa9.62□□□□□ -0.87
CKS1BP1-201ENST00000555221 LILRA1O75019 489 aa9.61□□□□□ -0.87
CKS1BP1-201ENST00000555221 NR3C2P08235 984 aa9.61□□□□□ -0.87
CKS1BP1-201ENST00000555221 CCER1Q8TC90 406 aaPredicted RBP9.61□□□□□ -0.87
CKS1BP1-201ENST00000555221 GNEQ9Y223 722 aaKnown RBP9.61□□□□□ -0.87
CKS1BP1-201ENST00000555221 WASLO00401 505 aaPredicted RBP9.6□□□□□ -0.87
CKS1BP1-201ENST00000555221 BACH1O14867 736 aa9.6□□□□□ -0.87
CKS1BP1-201ENST00000555221 GNRH1P01148 92 aa9.6□□□□□ -0.87
CKS1BP1-201ENST00000555221 ARID4AP29374 1257 aaPredicted RBP9.6□□□□□ -0.87
CKS1BP1-201ENST00000555221 NNTQ13423 1086 aa9.6□□□□□ -0.87
CKS1BP1-201ENST00000555221 HINFPQ9BQA5 517 aa9.6□□□□□ -0.87
CKS1BP1-201ENST00000555221 SLAIN2Q9P270 581 aa9.6□□□□□ -0.87
CKS1BP1-201ENST00000555221 IVNS1ABPQ9Y6Y0 642 aa9.6□□□□□ -0.87
CKS1BP1-201ENST00000555221 TTC24A2A3L6 582 aaPredicted RBP9.59□□□□□ -0.87
CKS1BP1-201ENST00000555221 GDF10P55107 478 aa9.59□□□□□ -0.87
CKS1BP1-201ENST00000555221 ESCO1Q5FWF5 840 aa9.59□□□□□ -0.87
CKS1BP1-201ENST00000555221 PHLDB3Q6NSJ2 640 aa9.59□□□□□ -0.87
CKS1BP1-201ENST00000555221 CYP4X1Q8N118 509 aa9.59□□□□□ -0.87
CKS1BP1-201ENST00000555221 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.59□□□□□ -0.87
CKS1BP1-201ENST00000555221 C1orf216Q8TAB5 229 aa9.59□□□□□ -0.87
CKS1BP1-201ENST00000555221 ZNF358Q9NW07 568 aa9.59□□□□□ -0.87
CKS1BP1-201ENST00000555221 TMEM229AB2RXF0 380 aa9.58□□□□□ -0.88
CKS1BP1-201ENST00000555221 PRMT3O60678 531 aa9.58□□□□□ -0.88
CKS1BP1-201ENST00000555221 SCNN1DP51172 638 aa9.58□□□□□ -0.88
CKS1BP1-201ENST00000555221 TSEN2Q8NCE0 465 aaKnown RBP9.58□□□□□ -0.88
CKS1BP1-201ENST00000555221 MTMR7Q9Y216 660 aa9.58□□□□□ -0.88
CKS1BP1-201ENST00000555221 INHAP05111 366 aa9.57□□□□□ -0.88
CKS1BP1-201ENST00000555221 TMCO4Q5TGY1 634 aa9.57□□□□□ -0.88
CKS1BP1-201ENST00000555221 TXNDC2Q86VQ3 553 aa9.57□□□□□ -0.88
CKS1BP1-201ENST00000555221 CXXC1Q9P0U4 656 aaPredicted RBP9.57□□□□□ -0.88
CKS1BP1-201ENST00000555221 GDF9O60383 454 aa9.56□□□□□ -0.88
CKS1BP1-201ENST00000555221 ADD1P35611 737 aaKnown RBP9.56□□□□□ -0.88
CKS1BP1-201ENST00000555221 OCLNQ16625 522 aa9.56□□□□□ -0.88
CKS1BP1-201ENST00000555221 PRIMPOLQ96LW4 560 aa9.56□□□□□ -0.88
CKS1BP1-201ENST00000555221 ADH1AP07327 375 aa9.55□□□□□ -0.88
CKS1BP1-201ENST00000555221 WEE1P30291 646 aa9.55□□□□□ -0.88
CKS1BP1-201ENST00000555221 ETNK1Q9HBU6 452 aa9.55□□□□□ -0.88
CKS1BP1-201ENST00000555221 SLC4A9Q96Q91 983 aa9.54□□□□□ -0.88
CKS1BP1-201ENST00000555221 TOR4AQ9NXH8 423 aa9.54□□□□□ -0.88
CKS1BP1-201ENST00000555221 J3QL48 77 aa9.53□□□□□ -0.88
CKS1BP1-201ENST00000555221 TNFRSF10AO00220 468 aa9.53□□□□□ -0.88
CKS1BP1-201ENST00000555221 ZIC2O95409 532 aaPredicted RBP9.53□□□□□ -0.88
CKS1BP1-201ENST00000555221 IGFBP4P22692 258 aa9.53□□□□□ -0.88
CKS1BP1-201ENST00000555221 WDR4P57081 412 aaKnown RBP9.53□□□□□ -0.88
CKS1BP1-201ENST00000555221 PRR20EP86478 221 aa9.53□□□□□ -0.88
CKS1BP1-201ENST00000555221 PRR20CP86479 221 aa9.53□□□□□ -0.88
CKS1BP1-201ENST00000555221 PRR20DP86480 221 aa9.53□□□□□ -0.88
CKS1BP1-201ENST00000555221 PRR20BP86481 221 aa9.53□□□□□ -0.88
CKS1BP1-201ENST00000555221 PRR20AP86496 221 aa9.53□□□□□ -0.88
CKS1BP1-201ENST00000555221 TAS1R3Q7RTX0 852 aa9.53□□□□□ -0.88
CKS1BP1-201ENST00000555221 ITPKCQ96DU7 683 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms