RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 RGS12O14924 1447 aa22.92■■□□□ 1.26
SHOX-204ENST00000554971 MEGF6O75095 1541 aa22.91■■□□□ 1.26
SHOX-204ENST00000554971 AEBP1Q8IUX7 1158 aa22.9■■□□□ 1.26
SHOX-204ENST00000554971 LRRC37A3O60309 1634 aa22.9■■□□□ 1.26
SHOX-204ENST00000554971 CFAP53Q96M91 514 aa22.9■■□□□ 1.26
SHOX-204ENST00000554971 KDRP35968 1356 aa22.89■■□□□ 1.25
SHOX-204ENST00000554971 SHANK3Q9BYB0 1731 aa22.88■■□□□ 1.25
SHOX-204ENST00000554971 PDE3BQ13370 1112 aa22.87■■□□□ 1.25
SHOX-204ENST00000554971 SEPT12Q8IYM1 358 aa22.86■■□□□ 1.25
SHOX-204ENST00000554971 RBM19Q9Y4C8 960 aaKnown RBP22.86■■□□□ 1.25
SHOX-204ENST00000554971 IL2RBP14784 551 aa22.85■■□□□ 1.25
SHOX-204ENST00000554971 SULT6B1Q6IMI4 303 aa22.85■■□□□ 1.25
SHOX-204ENST00000554971 U2SURPO15042 1029 aaKnown RBP22.84■■□□□ 1.25
SHOX-204ENST00000554971 HMOX1P09601 288 aa22.84■■□□□ 1.25
SHOX-204ENST00000554971 IRX6P78412 446 aaPredicted RBP22.84■■□□□ 1.25
SHOX-204ENST00000554971 PKD1L3Q7Z443 1732 aa22.84■■□□□ 1.25
SHOX-204ENST00000554971 OVOS2A0A0G2JMS6 1433 aa22.84■■□□□ 1.25
SHOX-204ENST00000554971 A0A0G2JS52 829 aa22.81■■□□□ 1.24
SHOX-204ENST00000554971 ILDR2Q71H61 639 aa22.81■■□□□ 1.24
SHOX-204ENST00000554971 TNS2Q63HR2 1409 aa22.81■■□□□ 1.24
SHOX-204ENST00000554971 CDCA7Q9BWT1 371 aaPredicted RBP22.8■■□□□ 1.24
SHOX-204ENST00000554971 RAPGEF4Q8WZA2 1011 aa22.8■■□□□ 1.24
SHOX-204ENST00000554971 U2AF1L5P0DN76 240 aaPredicted RBP22.79■■□□□ 1.24
SHOX-204ENST00000554971 U2AF1Q01081 240 aaKnown RBP eCLIP22.79■■□□□ 1.24
SHOX-204ENST00000554971 DDB1Q16531 1140 aa22.78■■□□□ 1.24
SHOX-204ENST00000554971 RSPH6AQ9H0K4 717 aa22.78■■□□□ 1.24
SHOX-204ENST00000554971 TATP17735 454 aaPredicted RBP22.77■■□□□ 1.24
SHOX-204ENST00000554971 FAM182BQ5T319 152 aa22.76■■□□□ 1.23
SHOX-204ENST00000554971 KAT6BQ8WYB5 2073 aa22.75■■□□□ 1.23
SHOX-204ENST00000554971 EXOC5O00471 708 aa22.74■■□□□ 1.23
SHOX-204ENST00000554971 MARCH10Q8NA82 808 aaPredicted RBP22.74■■□□□ 1.23
SHOX-204ENST00000554971 PLEKHG2Q9H7P9 1386 aa22.74■■□□□ 1.23
SHOX-204ENST00000554971 KRT27Q7Z3Y8 459 aa22.74■■□□□ 1.23
SHOX-204ENST00000554971 ZCRB1Q8TBF4 217 aaKnown RBP22.74■■□□□ 1.23
SHOX-204ENST00000554971 ADAMTS8Q9UP79 889 aa22.74■■□□□ 1.23
SHOX-204ENST00000554971 FCHSD2O94868 740 aa22.73■■□□□ 1.23
SHOX-204ENST00000554971 PRKAR2BP31323 418 aa22.73■■□□□ 1.23
SHOX-204ENST00000554971 PHACTR3Q96KR7 559 aa22.73■■□□□ 1.23
SHOX-204ENST00000554971 CYP27B1O15528 508 aa22.72■■□□□ 1.23
SHOX-204ENST00000554971 SBF2Q86WG5 1849 aa22.72■■□□□ 1.23
SHOX-204ENST00000554971 PLEKHF1Q96S99 279 aa22.72■■□□□ 1.23
SHOX-204ENST00000554971 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.72■■□□□ 1.23
SHOX-204ENST00000554971 VIRMAQ69YN4 1812 aaKnown RBP22.71■■□□□ 1.23
SHOX-204ENST00000554971 DDX54Q8TDD1 881 aaKnown RBP22.7■■□□□ 1.22
SHOX-204ENST00000554971 FANCIQ9NVI1 1328 aa22.7■■□□□ 1.22
SHOX-204ENST00000554971 DLG5Q8TDM6 1919 aa22.69■■□□□ 1.22
SHOX-204ENST00000554971 WDR43Q15061 677 aaKnown RBP eCLIP22.69■■□□□ 1.22
SHOX-204ENST00000554971 MTHFSDQ2M296 383 aaKnown RBP22.69■■□□□ 1.22
SHOX-204ENST00000554971 PCDH11XQ9BZA7 1347 aa22.68■■□□□ 1.22
SHOX-204ENST00000554971 PCDH11YQ9BZA8 1340 aa22.68■■□□□ 1.22
SHOX-204ENST00000554971 TOGARAM1Q9Y4F4 1720 aa22.68■■□□□ 1.22
SHOX-204ENST00000554971 B4GALNT3Q6L9W6 998 aa22.67■■□□□ 1.22
SHOX-204ENST00000554971 SPG7Q9UQ90 795 aa22.67■■□□□ 1.22
SHOX-204ENST00000554971 AMOTQ4VCS5 1084 aa22.67■■□□□ 1.22
SHOX-204ENST00000554971 PLEKHO1Q53GL0 409 aaPredicted RBP22.67■■□□□ 1.22
SHOX-204ENST00000554971 DOT1LQ8TEK3 1739 aa22.66■■□□□ 1.22
SHOX-204ENST00000554971 PHKG2P15735 406 aa22.65■■□□□ 1.22
SHOX-204ENST00000554971 CCDC146Q8IYE0 955 aa22.65■■□□□ 1.22
SHOX-204ENST00000554971 ZNF530Q6P9A1 599 aaPredicted RBP22.65■■□□□ 1.22
SHOX-204ENST00000554971 BCL9O00512 1426 aa22.64■■□□□ 1.22
SHOX-204ENST00000554971 ITGB4P16144 1822 aa22.63■■□□□ 1.21
SHOX-204ENST00000554971 SCN11AQ9UI33 1791 aa22.63■■□□□ 1.21
SHOX-204ENST00000554971 RCAN3Q9UKA8 241 aa22.63■■□□□ 1.21
SHOX-204ENST00000554971 IFNL2Q8IZJ0 200 aa22.63■■□□□ 1.21
SHOX-204ENST00000554971 ANP32EQ9BTT0 268 aa22.63■■□□□ 1.21
SHOX-204ENST00000554971 ADAMTS7Q9UKP4 1686 aa22.62■■□□□ 1.21
SHOX-204ENST00000554971 KDM6AO15550 1401 aaPredicted RBP22.62■■□□□ 1.21
SHOX-204ENST00000554971 RRP1P56182 461 aaKnown RBP22.61■■□□□ 1.21
SHOX-204ENST00000554971 NKX1-1Q15270 411 aaPredicted RBP22.61■■□□□ 1.21
SHOX-204ENST00000554971 CCDC136Q96JN2 1154 aa22.61■■□□□ 1.21
SHOX-204ENST00000554971 PTF1AQ7RTS3 328 aa22.61■■□□□ 1.21
SHOX-204ENST00000554971 NHSQ6T4R5 1651 aa22.6■■□□□ 1.21
SHOX-204ENST00000554971 FAM196AQ6ZSG2 479 aa22.6■■□□□ 1.21
SHOX-204ENST00000554971 TNS1Q9HBL0 1735 aaKnown RBP22.59■■□□□ 1.21
SHOX-204ENST00000554971 AKAP4Q5JQC9 854 aa22.59■■□□□ 1.21
SHOX-204ENST00000554971 GAS2L2Q8NHY3 880 aa22.59■■□□□ 1.21
SHOX-204ENST00000554971 RUNDC1Q96C34 613 aa22.59■■□□□ 1.21
SHOX-204ENST00000554971 KCNQ2O43526 872 aa22.58■■□□□ 1.21
SHOX-204ENST00000554971 MPRIPQ6WCQ1 1025 aa22.57■■□□□ 1.2
SHOX-204ENST00000554971 ACSBG1Q96GR2 724 aa22.57■■□□□ 1.2
SHOX-204ENST00000554971 PNNQ9H307 717 aaKnown RBP22.57■■□□□ 1.2
SHOX-204ENST00000554971 MAPK8IP3Q9UPT6 1336 aa22.57■■□□□ 1.2
SHOX-204ENST00000554971 C1orf141Q5JVX7 400 aa22.57■■□□□ 1.2
SHOX-204ENST00000554971 MAP3K5Q99683 1374 aa22.56■■□□□ 1.2
SHOX-204ENST00000554971 BTAF1O14981 1849 aa22.56■■□□□ 1.2
SHOX-204ENST00000554971 NFE2L2Q16236 605 aa22.55■■□□□ 1.2
SHOX-204ENST00000554971 LGR6Q9HBX8 967 aa22.55■■□□□ 1.2
SHOX-204ENST00000554971 TRIM37O94972 964 aa22.55■■□□□ 1.2
SHOX-204ENST00000554971 NGEFQ8N5V2 710 aa22.55■■□□□ 1.2
SHOX-204ENST00000554971 DCAF5Q96JK2 942 aa22.55■■□□□ 1.2
SHOX-204ENST00000554971 RRP7AQ9Y3A4 280 aaKnown RBP22.55■■□□□ 1.2
SHOX-204ENST00000554971 SENP3-EIF4A1A0A087X0R7 540 aa22.54■■□□□ 1.2
SHOX-204ENST00000554971 GNAT3A8MTJ3 354 aa22.54■■□□□ 1.2
SHOX-204ENST00000554971 TMPOP42166 694 aaKnown RBP22.54■■□□□ 1.2
SHOX-204ENST00000554971 SIPA1L3O60292 1781 aaPredicted RBP22.54■■□□□ 1.2
SHOX-204ENST00000554971 APAF1O14727 1248 aa22.53■■□□□ 1.2
SHOX-204ENST00000554971 IL17REQ8NFR9 667 aa22.53■■□□□ 1.2
SHOX-204ENST00000554971 NEFMP07197 916 aa22.53■■□□□ 1.2
SHOX-204ENST00000554971 PRIM1P49642 420 aaKnown RBP22.53■■□□□ 1.2
SHOX-204ENST00000554971 MRC1P22897 1456 aa22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 122.9 ms