RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 GPSM3Q9Y4H4 160 aa9.75□□□□□ -0.85
VPS29-210ENST00000552130 MFAP1P55081 439 aaKnown RBP9.74□□□□□ -0.85
VPS29-210ENST00000552130 FOXD4L5Q5VV16 416 aaPredicted RBP9.74□□□□□ -0.85
VPS29-210ENST00000552130 KDF1Q8NAX2 398 aaPredicted RBP9.74□□□□□ -0.85
VPS29-210ENST00000552130 FOXD4L4Q8WXT5 416 aaPredicted RBP9.74□□□□□ -0.85
VPS29-210ENST00000552130 ZNF428Q96B54 188 aa9.74□□□□□ -0.85
VPS29-210ENST00000552130 RELBQ01201 579 aa9.73□□□□□ -0.85
VPS29-210ENST00000552130 NR6A1Q15406 480 aa9.73□□□□□ -0.85
VPS29-210ENST00000552130 ZBTB33Q86T24 672 aa9.73□□□□□ -0.85
VPS29-210ENST00000552130 DNMT3AQ9Y6K1 912 aaPredicted RBP9.73□□□□□ -0.85
VPS29-210ENST00000552130 PPP2R2DQ66LE6 453 aa9.72□□□□□ -0.85
VPS29-210ENST00000552130 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.72□□□□□ -0.85
VPS29-210ENST00000552130 LILRA1O75019 489 aa9.71□□□□□ -0.86
VPS29-210ENST00000552130 PTK2Q05397 1052 aa9.71□□□□□ -0.86
VPS29-210ENST00000552130 ADAM32Q8TC27 787 aa9.71□□□□□ -0.86
VPS29-210ENST00000552130 TMPRSS4Q9NRS4 437 aa9.71□□□□□ -0.86
VPS29-210ENST00000552130 CDC14CA4D256 554 aa9.7□□□□□ -0.86
VPS29-210ENST00000552130 ZNF395Q9H8N7 513 aaPredicted RBP9.7□□□□□ -0.86
VPS29-210ENST00000552130 TRAK2O60296 914 aa9.69□□□□□ -0.86
VPS29-210ENST00000552130 ADH1AP07327 375 aa9.69□□□□□ -0.86
VPS29-210ENST00000552130 IRS1P35568 1242 aa9.69□□□□□ -0.86
VPS29-210ENST00000552130 ADD1P35611 737 aaKnown RBP9.69□□□□□ -0.86
VPS29-210ENST00000552130 GAS6Q14393 721 aa9.69□□□□□ -0.86
VPS29-210ENST00000552130 SKIV2LQ15477 1246 aaKnown RBP9.69□□□□□ -0.86
VPS29-210ENST00000552130 KANK3Q6NY19 840 aa9.69□□□□□ -0.86
VPS29-210ENST00000552130 ZNF784Q8NCA9 323 aaPredicted RBP9.69□□□□□ -0.86
VPS29-210ENST00000552130 POLMQ9NP87 494 aaPredicted RBP9.69□□□□□ -0.86
VPS29-210ENST00000552130 A6NJR5 290 aa9.68□□□□□ -0.86
VPS29-210ENST00000552130 ESPNB1AK53 854 aa9.68□□□□□ -0.86
VPS29-210ENST00000552130 E9PSI1 815 aa9.68□□□□□ -0.86
VPS29-210ENST00000552130 ADAMTS2O95450 1211 aa9.68□□□□□ -0.86
VPS29-210ENST00000552130 IGHA1P01876 353 aa9.68□□□□□ -0.86
VPS29-210ENST00000552130 SRSF11Q05519 484 aaKnown RBP9.68□□□□□ -0.86
VPS29-210ENST00000552130 NBPF20Q3BBV1 942 aa9.68□□□□□ -0.86
VPS29-210ENST00000552130 LYPD4Q6UWN0 246 aa9.68□□□□□ -0.86
VPS29-210ENST00000552130 GZF1Q9H116 711 aaPredicted RBP9.68□□□□□ -0.86
VPS29-210ENST00000552130 CUEDC1Q9NWM3 386 aaPredicted RBP9.68□□□□□ -0.86
VPS29-210ENST00000552130 PTGIRP43119 386 aa9.67□□□□□ -0.86
VPS29-210ENST00000552130 SH3D19Q5HYK7 790 aa9.67□□□□□ -0.86
VPS29-210ENST00000552130 ERVH48-1M5A8F1 160 aa9.66□□□□□ -0.86
VPS29-210ENST00000552130 FOXK2Q01167 660 aa9.65□□□□□ -0.86
VPS29-210ENST00000552130 PROCA1Q8NCQ7 364 aaPredicted RBP9.65□□□□□ -0.86
VPS29-210ENST00000552130 EPS8L1Q8TE68 723 aa9.65□□□□□ -0.86
VPS29-210ENST00000552130 SCARF2Q96GP6 870 aaPredicted RBP9.65□□□□□ -0.86
VPS29-210ENST00000552130 CELA2BP08218 269 aaPredicted RBP9.64□□□□□ -0.87
VPS29-210ENST00000552130 MARSP56192 900 aaKnown RBP9.63□□□□□ -0.87
VPS29-210ENST00000552130 GPAT2Q6NUI2 795 aa9.63□□□□□ -0.87
VPS29-210ENST00000552130 HMX1Q9NP08 348 aaPredicted RBP9.63□□□□□ -0.87
VPS29-210ENST00000552130 RNF144AP50876 292 aaPredicted RBP9.62□□□□□ -0.87
VPS29-210ENST00000552130 LYSMD3Q7Z3D4 306 aa9.62□□□□□ -0.87
VPS29-210ENST00000552130 CLUAP1Q96AJ1 413 aa9.62□□□□□ -0.87
VPS29-210ENST00000552130 SEPT12Q8IYM1 358 aa9.6□□□□□ -0.87
VPS29-210ENST00000552130 GMCL1Q96IK5 515 aa9.6□□□□□ -0.87
VPS29-210ENST00000552130 USP35Q9P2H5 1018 aa9.6□□□□□ -0.87
VPS29-210ENST00000552130 AP1G2O75843 785 aa9.59□□□□□ -0.87
VPS29-210ENST00000552130 DZIP3Q86Y13 1208 aaKnown RBP9.59□□□□□ -0.87
VPS29-210ENST00000552130 ZNF837Q96EG3 531 aaPredicted RBP9.59□□□□□ -0.87
VPS29-210ENST00000552130 RAB15P59190 212 aa9.58□□□□□ -0.88
VPS29-210ENST00000552130 TRIM22Q8IYM9 498 aa9.58□□□□□ -0.88
VPS29-210ENST00000552130 MBIPQ9NS73 344 aa9.58□□□□□ -0.88
VPS29-210ENST00000552130 ITGB2P05107 769 aa9.57□□□□□ -0.88
VPS29-210ENST00000552130 USP17L8P0C7I0 530 aa9.57□□□□□ -0.88
VPS29-210ENST00000552130 MAP3K10Q02779 954 aa9.57□□□□□ -0.88
VPS29-210ENST00000552130 RETREG2Q8NC44 543 aa9.57□□□□□ -0.88
VPS29-210ENST00000552130 CCDC97Q96F63 343 aaPredicted RBP9.57□□□□□ -0.88
VPS29-210ENST00000552130 FAM117AQ9C073 453 aa9.57□□□□□ -0.88
VPS29-210ENST00000552130 SERPINA10Q9UK55 444 aa9.57□□□□□ -0.88
VPS29-210ENST00000552130 GPC1P35052 558 aa9.56□□□□□ -0.88
VPS29-210ENST00000552130 PRICKLE2Q7Z3G6 844 aa9.56□□□□□ -0.88
VPS29-210ENST00000552130 PNMA1Q8ND90 353 aa9.56□□□□□ -0.88
VPS29-210ENST00000552130 RHOQP17081 205 aa9.55□□□□□ -0.88
VPS29-210ENST00000552130 DBN1Q16643 649 aa9.55□□□□□ -0.88
VPS29-210ENST00000552130 DDRGK1Q96HY6 314 aa9.55□□□□□ -0.88
VPS29-210ENST00000552130 TRIM34Q9BYJ4 488 aa9.55□□□□□ -0.88
VPS29-210ENST00000552130 CYLDQ9NQC7 956 aa9.55□□□□□ -0.88
VPS29-210ENST00000552130 ENAMQ9NRM1 1142 aa9.55□□□□□ -0.88
VPS29-210ENST00000552130 IGF1RP08069 1367 aa9.54□□□□□ -0.88
VPS29-210ENST00000552130 IRF5Q13568 498 aa9.53□□□□□ -0.88
VPS29-210ENST00000552130 PLA2G4EQ3MJ16 856 aa9.53□□□□□ -0.88
VPS29-210ENST00000552130 DCAF5Q96JK2 942 aa9.53□□□□□ -0.88
VPS29-210ENST00000552130 LRRC4BQ9NT99 713 aa9.53□□□□□ -0.88
VPS29-210ENST00000552130 ZNF777Q9ULD5 760 aaPredicted RBP9.53□□□□□ -0.88
VPS29-210ENST00000552130 ATP5J2-PTCD1G3V325 749 aa9.52□□□□□ -0.89
VPS29-210ENST00000552130 DYRK1BQ9Y463 629 aa9.52□□□□□ -0.89
VPS29-210ENST00000552130 CNTNAP5Q8WYK1 1306 aa9.52□□□□□ -0.89
VPS29-210ENST00000552130 GPR25O00155 361 aa9.51□□□□□ -0.89
VPS29-210ENST00000552130 BCRP11274 1271 aa9.51□□□□□ -0.89
VPS29-210ENST00000552130 RFC5P40937 340 aa9.51□□□□□ -0.89
VPS29-210ENST00000552130 TRIM52Q96A61 297 aa9.51□□□□□ -0.89
VPS29-210ENST00000552130 ACDQ96AP0 544 aa9.51□□□□□ -0.89
VPS29-210ENST00000552130 PHF20L1A8MW92 1017 aa9.5□□□□□ -0.89
VPS29-210ENST00000552130 GIGYF1O75420 1035 aaPredicted RBP9.5□□□□□ -0.89
VPS29-210ENST00000552130 ERVK-9P63128 1117 aa9.5□□□□□ -0.89
VPS29-210ENST00000552130 CCDC125Q86Z20 511 aa9.5□□□□□ -0.89
VPS29-210ENST00000552130 A0A1W2PRU2 124 aa9.49□□□□□ -0.89
VPS29-210ENST00000552130 ADAM23O75077 832 aa9.49□□□□□ -0.89
VPS29-210ENST00000552130 SPOCK3Q9BQ16 436 aa9.49□□□□□ -0.89
VPS29-210ENST00000552130 GRIP2Q9C0E4 1043 aa9.49□□□□□ -0.89
VPS29-210ENST00000552130 H7C1W4 665 aa9.48□□□□□ -0.89
VPS29-210ENST00000552130 MSTNO14793 375 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 92.9 ms