RNA–Protein interactions for RNA: ENST00000544506.1

LEMD3-205, Transcript of LEM domain containing 3, human

TSL 5

Gene LEMD3, Length 412 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LEMD3-205	ENST00000544506	SIRT1	Q96EB6	747 aa		10.3	□□□□□ -0.76
LEMD3-205	ENST00000544506	OSBPL3	Q9H4L5	887 aa		10.3	□□□□□ -0.76
LEMD3-205	ENST00000544506	NOD1	Q9Y239	953 aa		10.3	□□□□□ -0.76
LEMD3-205	ENST00000544506		Q6ZVU0	165 aa		10.29	□□□□□ -0.76
LEMD3-205	ENST00000544506	MKRN1	Q9UHC7	482 aa	Known RBP	10.29	□□□□□ -0.76
LEMD3-205	ENST00000544506	CTC1	Q2NKJ3	1217 aa		10.28	□□□□□ -0.76
LEMD3-205	ENST00000544506	KANK4	Q5T7N3	995 aa	Predicted RBP	10.28	□□□□□ -0.76
LEMD3-205	ENST00000544506	MEIOB	Q8N635	442 aa		10.28	□□□□□ -0.76
LEMD3-205	ENST00000544506	ESF1	Q9H501	851 aa	Known RBP	10.28	□□□□□ -0.76
LEMD3-205	ENST00000544506	ATP5J2-PTCD1	G3V325	749 aa		10.27	□□□□□ -0.77
LEMD3-205	ENST00000544506	ADH1A	P07327	375 aa		10.27	□□□□□ -0.77
LEMD3-205	ENST00000544506	SMCP	P49901	116 aa	Predicted RBP	10.27	□□□□□ -0.77
LEMD3-205	ENST00000544506	GTF2I	P78347	998 aa		10.27	□□□□□ -0.77
LEMD3-205	ENST00000544506	SRPK2	P78362	688 aa	Known RBP	10.27	□□□□□ -0.77
LEMD3-205	ENST00000544506	CDCA8	Q53HL2	280 aa		10.27	□□□□□ -0.77
LEMD3-205	ENST00000544506	PBXIP1	Q96AQ6	731 aa		10.27	□□□□□ -0.77
LEMD3-205	ENST00000544506	VRTN	Q9H8Y1	702 aa		10.27	□□□□□ -0.77
LEMD3-205	ENST00000544506	CYP2U1	Q7Z449	544 aa		10.26	□□□□□ -0.77
LEMD3-205	ENST00000544506	TRIM50	Q86XT4	487 aa		10.26	□□□□□ -0.77
LEMD3-205	ENST00000544506	CRIPAK	Q8N1N5	446 aa		10.26	□□□□□ -0.77
LEMD3-205	ENST00000544506	AXIN1	O15169	862 aa		10.25	□□□□□ -0.77
LEMD3-205	ENST00000544506	CLDN10	P78369	228 aa		10.25	□□□□□ -0.77
LEMD3-205	ENST00000544506	AGBL1	Q96MI9	1066 aa		10.25	□□□□□ -0.77
LEMD3-205	ENST00000544506	PCDHGA11	Q9Y5H2	935 aa		10.25	□□□□□ -0.77
LEMD3-205	ENST00000544506	ST8SIA5	O15466	376 aa		10.24	□□□□□ -0.77
LEMD3-205	ENST00000544506	ATP1A2	P50993	1020 aa		10.24	□□□□□ -0.77
LEMD3-205	ENST00000544506	OGFOD1	Q8N543	542 aa		10.24	□□□□□ -0.77
LEMD3-205	ENST00000544506	KDF1	Q8NAX2	398 aa	Predicted RBP	10.24	□□□□□ -0.77
LEMD3-205	ENST00000544506	KIAA1024	Q9UPX6	916 aa		10.24	□□□□□ -0.77
LEMD3-205	ENST00000544506	BMP1	P13497	986 aa		10.23	□□□□□ -0.77
LEMD3-205	ENST00000544506	RASA1	P20936	1047 aa		10.23	□□□□□ -0.77
LEMD3-205	ENST00000544506	RELB	Q01201	579 aa		10.23	□□□□□ -0.77
LEMD3-205	ENST00000544506	CRTC2	Q53ET0	693 aa	Predicted RBP	10.23	□□□□□ -0.77
LEMD3-205	ENST00000544506	AAAS	Q9NRG9	546 aa		10.23	□□□□□ -0.77
LEMD3-205	ENST00000544506	DNAAF2	Q9NVR5	837 aa	Known RBP	10.23	□□□□□ -0.77
LEMD3-205	ENST00000544506	USP17L15	C9J2P7	530 aa		10.22	□□□□□ -0.77
LEMD3-205	ENST00000544506	USP17L10	C9JJH3	530 aa		10.22	□□□□□ -0.77
LEMD3-205	ENST00000544506	USP17L13	C9JLJ4	530 aa		10.22	□□□□□ -0.77
LEMD3-205	ENST00000544506	USP17L12	C9JPN9	530 aa		10.22	□□□□□ -0.77
LEMD3-205	ENST00000544506	USP17L11	C9JVI0	530 aa		10.22	□□□□□ -0.77
LEMD3-205	ENST00000544506	USP17L21	D6R901	530 aa		10.22	□□□□□ -0.77
LEMD3-205	ENST00000544506	USP17L18	D6R9N7	530 aa		10.22	□□□□□ -0.77
LEMD3-205	ENST00000544506	USP17L22	D6RA61	530 aa		10.22	□□□□□ -0.77
LEMD3-205	ENST00000544506	USP17L17	D6RBQ6	530 aa		10.22	□□□□□ -0.77
LEMD3-205	ENST00000544506	USP17L19	D6RCP7	530 aa		10.22	□□□□□ -0.77
LEMD3-205	ENST00000544506	USP17L20	D6RJB6	530 aa		10.22	□□□□□ -0.77
LEMD3-205	ENST00000544506	STAU1	O95793	577 aa	Known RBP	10.22	□□□□□ -0.77
LEMD3-205	ENST00000544506	PSME1	Q06323	249 aa		10.22	□□□□□ -0.77
LEMD3-205	ENST00000544506	USP17L24	Q0WX57	530 aa		10.22	□□□□□ -0.77
LEMD3-205	ENST00000544506		Q6ZNB5	142 aa		10.22	□□□□□ -0.77
LEMD3-205	ENST00000544506	LINC00528	Q8N1L1	170 aa		10.22	□□□□□ -0.77
LEMD3-205	ENST00000544506	ZNF594	Q96JF6	807 aa	Predicted RBP	10.22	□□□□□ -0.77
LEMD3-205	ENST00000544506	ARHGEF10L	Q9HCE6	1279 aa		10.22	□□□□□ -0.77
LEMD3-205	ENST00000544506	FAM196B	A6NMK8	535 aa		10.21	□□□□□ -0.77
LEMD3-205	ENST00000544506	ZBTB7B	O15156	539 aa	Predicted RBP	10.21	□□□□□ -0.77
LEMD3-205	ENST00000544506	PPP1R15A	O75807	674 aa	Predicted RBP	10.21	□□□□□ -0.77
LEMD3-205	ENST00000544506	PTGIR	P43119	386 aa		10.21	□□□□□ -0.77
LEMD3-205	ENST00000544506	MRPL14	Q6P1L8	145 aa	Known RBP	10.21	□□□□□ -0.77
LEMD3-205	ENST00000544506	LARP1	Q6PKG0	1096 aa	Known RBP	10.21	□□□□□ -0.77
LEMD3-205	ENST00000544506	TRIM46	Q7Z4K8	759 aa		10.21	□□□□□ -0.77
LEMD3-205	ENST00000544506	RAB6B	Q9NRW1	208 aa		10.21	□□□□□ -0.77
LEMD3-205	ENST00000544506	GNRH1	P01148	92 aa		10.2	□□□□□ -0.78
LEMD3-205	ENST00000544506	SCNN1D	P51172	638 aa		10.2	□□□□□ -0.78
LEMD3-205	ENST00000544506	PTK7	Q13308	1070 aa		10.2	□□□□□ -0.78
LEMD3-205	ENST00000544506	LARGE2	Q8N3Y3	721 aa		10.2	□□□□□ -0.78
LEMD3-205	ENST00000544506	TSEN34	Q9BSV6	310 aa	Known RBP	10.2	□□□□□ -0.78
LEMD3-205	ENST00000544506	ZNF395	Q9H8N7	513 aa	Predicted RBP	10.2	□□□□□ -0.78
LEMD3-205	ENST00000544506	ETNK1	Q9HBU6	452 aa		10.2	□□□□□ -0.78
LEMD3-205	ENST00000544506	UPP2	O95045	317 aa		10.19	□□□□□ -0.78
LEMD3-205	ENST00000544506	SIX5	Q8N196	739 aa		10.19	□□□□□ -0.78
LEMD3-205	ENST00000544506	TPCN2	Q8NHX9	752 aa		10.19	□□□□□ -0.78
LEMD3-205	ENST00000544506	TMEM229A	B2RXF0	380 aa		10.18	□□□□□ -0.78
LEMD3-205	ENST00000544506	LCE2B	O14633	110 aa		10.18	□□□□□ -0.78
LEMD3-205	ENST00000544506	DKK1	O94907	266 aa		10.18	□□□□□ -0.78
LEMD3-205	ENST00000544506	ATG7	O95352	703 aa		10.18	□□□□□ -0.78
LEMD3-205	ENST00000544506	GDF10	P55107	478 aa		10.18	□□□□□ -0.78
LEMD3-205	ENST00000544506	C6orf118	Q5T5N4	469 aa		10.18	□□□□□ -0.78
LEMD3-205	ENST00000544506	CCDC102B	Q68D86	513 aa		10.18	□□□□□ -0.78
LEMD3-205	ENST00000544506	DACH1	Q9UI36	760 aa		10.18	□□□□□ -0.78
LEMD3-205	ENST00000544506		A0A1W2PRU2	124 aa		10.17	□□□□□ -0.78
LEMD3-205	ENST00000544506	IL2RA	P01589	272 aa		10.17	□□□□□ -0.78
LEMD3-205	ENST00000544506	BMP2	P12643	396 aa		10.17	□□□□□ -0.78
LEMD3-205	ENST00000544506	PURB	Q96QR8	312 aa	Known RBP	10.17	□□□□□ -0.78
LEMD3-205	ENST00000544506	ATP13A2	Q9NQ11	1180 aa		10.17	□□□□□ -0.78
LEMD3-205	ENST00000544506	NOVA2	Q9UNW9	492 aa	Known RBP	10.17	□□□□□ -0.78
LEMD3-205	ENST00000544506	SPINT1	O43278	529 aa		10.16	□□□□□ -0.78
LEMD3-205	ENST00000544506	DPYD	Q12882	1025 aa		10.16	□□□□□ -0.78
LEMD3-205	ENST00000544506	ESCO1	Q5FWF5	840 aa		10.16	□□□□□ -0.78
LEMD3-205	ENST00000544506	ANKMY2	Q8IV38	441 aa		10.16	□□□□□ -0.78
LEMD3-205	ENST00000544506	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	10.16	□□□□□ -0.78
LEMD3-205	ENST00000544506	ARX	Q96QS3	562 aa		10.16	□□□□□ -0.78
LEMD3-205	ENST00000544506	ZMIZ1	Q9ULJ6	1067 aa		10.16	□□□□□ -0.78
LEMD3-205	ENST00000544506	MEN1	O00255	615 aa		10.15	□□□□□ -0.78
LEMD3-205	ENST00000544506	WASL	O00401	505 aa	Predicted RBP	10.15	□□□□□ -0.78
LEMD3-205	ENST00000544506	INHA	P05111	366 aa		10.15	□□□□□ -0.78
LEMD3-205	ENST00000544506	CLN3	Q13286	438 aa		10.15	□□□□□ -0.78
LEMD3-205	ENST00000544506	SCARF1	Q14162	830 aa		10.15	□□□□□ -0.78
LEMD3-205	ENST00000544506	ELOA	Q14241	798 aa	Known RBP	10.15	□□□□□ -0.78
LEMD3-205	ENST00000544506	INSM2	Q96T92	566 aa	Predicted RBP	10.15	□□□□□ -0.78
LEMD3-205	ENST00000544506	ZNF358	Q9NW07	568 aa		10.15	□□□□□ -0.78

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