RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 TONSLQ96HA7 1378 aa20.24■□□□□ 0.83
CPSF1-201ENST00000526271 PRIM1P49642 420 aaKnown RBP20.24■□□□□ 0.83
CPSF1-201ENST00000526271 RRS1Q15050 365 aaKnown RBP20.22■□□□□ 0.83
CPSF1-201ENST00000526271 NBPF6Q5VWK0 638 aa20.22■□□□□ 0.83
CPSF1-201ENST00000526271 NBPF4Q96M43 638 aa20.22■□□□□ 0.83
CPSF1-201ENST00000526271 TOGARAM1Q9Y4F4 1720 aa20.22■□□□□ 0.83
CPSF1-201ENST00000526271 FYB1O15117 783 aa20.2■□□□□ 0.82
CPSF1-201ENST00000526271 USHBP1Q8N6Y0 703 aa20.2■□□□□ 0.82
CPSF1-201ENST00000526271 KIF20BQ96Q89 1820 aa20.2■□□□□ 0.82
CPSF1-201ENST00000526271 TAF1LQ8IZX4 1826 aa20.19■□□□□ 0.82
CPSF1-201ENST00000526271 DCAF8L1A6NGE4 600 aa20.19■□□□□ 0.82
CPSF1-201ENST00000526271 SLC27A3Q5K4L6 730 aa20.19■□□□□ 0.82
CPSF1-201ENST00000526271 COG3Q96JB2 828 aa20.19■□□□□ 0.82
CPSF1-201ENST00000526271 NLGN2Q8NFZ4 835 aa20.18■□□□□ 0.82
CPSF1-201ENST00000526271 GGNBP2Q9H3C7 697 aa20.18■□□□□ 0.82
CPSF1-201ENST00000526271 ZCRB1Q8TBF4 217 aaKnown RBP20.17■□□□□ 0.82
CPSF1-201ENST00000526271 RTL1A6NKG5 1358 aa20.17■□□□□ 0.82
CPSF1-201ENST00000526271 C5P01031 1676 aa20.16■□□□□ 0.82
CPSF1-201ENST00000526271 SYTL4Q96C24 671 aaPredicted RBP20.16■□□□□ 0.82
CPSF1-201ENST00000526271 ITGB4P16144 1822 aa20.16■□□□□ 0.82
CPSF1-201ENST00000526271 AMPHP49418 695 aa20.15■□□□□ 0.82
CPSF1-201ENST00000526271 HSP90AB2PQ58FF8 381 aa20.14■□□□□ 0.81
CPSF1-201ENST00000526271 AMIGO3Q86WK7 504 aa20.14■□□□□ 0.81
CPSF1-201ENST00000526271 COL23A1Q86Y22 540 aaPredicted RBP20.14■□□□□ 0.81
CPSF1-201ENST00000526271 SLC16A10Q8TF71 515 aa20.14■□□□□ 0.81
CPSF1-201ENST00000526271 PKD1L3Q7Z443 1732 aa20.13■□□□□ 0.81
CPSF1-201ENST00000526271 ANKRD26Q9UPS8 1709 aa20.13■□□□□ 0.81
CPSF1-201ENST00000526271 USP47Q96K76 1375 aa20.12■□□□□ 0.81
CPSF1-201ENST00000526271 MAP2P11137 1827 aaKnown RBP20.12■□□□□ 0.81
CPSF1-201ENST00000526271 CARD14Q9BXL6 1004 aa20.12■□□□□ 0.81
CPSF1-201ENST00000526271 NCAPD2Q15021 1401 aa20.11■□□□□ 0.81
CPSF1-201ENST00000526271 TFCP2L1Q9NZI6 479 aa20.11■□□□□ 0.81
CPSF1-201ENST00000526271 CCNL1Q9UK58 526 aaPredicted RBP20.11■□□□□ 0.81
CPSF1-201ENST00000526271 INSRP06213 1382 aa20.1■□□□□ 0.81
CPSF1-201ENST00000526271 CYP27B1O15528 508 aa20.1■□□□□ 0.81
CPSF1-201ENST00000526271 YBX3P16989 372 aaKnown RBP eCLIP20.1■□□□□ 0.812e-11■□□□□ 9
CPSF1-201ENST00000526271 UBR3Q6ZT12 1888 aa20.09■□□□□ 0.81
CPSF1-201ENST00000526271 KLHL34Q8N239 644 aa20.08■□□□□ 0.81
CPSF1-201ENST00000526271 SMIM5Q71RC9 77 aa20.07■□□□□ 0.8
CPSF1-201ENST00000526271 EMILIN1Q9Y6C2 1016 aa20.07■□□□□ 0.8
CPSF1-201ENST00000526271 C4BP0C0L5 1744 aa20.07■□□□□ 0.8
CPSF1-201ENST00000526271 GPR162Q16538 588 aa20.06■□□□□ 0.8
CPSF1-201ENST00000526271 MSL1Q68DK7 614 aa20.06■□□□□ 0.8
CPSF1-201ENST00000526271 FLT4P35916 1363 aa20.06■□□□□ 0.8
CPSF1-201ENST00000526271 POLD1P28340 1107 aa20.05■□□□□ 0.8
CPSF1-201ENST00000526271 C1QTNF8P60827 252 aa20.05■□□□□ 0.8
CPSF1-201ENST00000526271 CEP350Q5VT06 3117 aa20.05■□□□□ 0.8
CPSF1-201ENST00000526271 CGNL1Q0VF96 1302 aa20.04■□□□□ 0.8
CPSF1-201ENST00000526271 PALLDQ8WX93 1383 aa20.04■□□□□ 0.8
CPSF1-201ENST00000526271 NSD3Q9BZ95 1437 aa20.03■□□□□ 0.8
CPSF1-201ENST00000526271 TMF1P82094 1093 aa20.03■□□□□ 0.8
CPSF1-201ENST00000526271 RAPGEF4Q8WZA2 1011 aa20.02■□□□□ 0.8
CPSF1-201ENST00000526271 KIF24Q5T7B8 1368 aa20.02■□□□□ 0.8
CPSF1-201ENST00000526271 PCDH11XQ9BZA7 1347 aa20.02■□□□□ 0.79
CPSF1-201ENST00000526271 PCDH11YQ9BZA8 1340 aa20.02■□□□□ 0.79
CPSF1-201ENST00000526271 TATP17735 454 aaPredicted RBP20.01■□□□□ 0.79
CPSF1-201ENST00000526271 SMG6Q86US8 1419 aaKnown RBP20.01■□□□□ 0.79
CPSF1-201ENST00000526271 MPRIPQ6WCQ1 1025 aa20■□□□□ 0.79
CPSF1-201ENST00000526271 PELP1Q8IZL8 1130 aaKnown RBP20■□□□□ 0.79
CPSF1-201ENST00000526271 PIGBQ92521 554 aa19.99■□□□□ 0.79
CPSF1-201ENST00000526271 NKX1-1Q15270 411 aaPredicted RBP19.98■□□□□ 0.79
CPSF1-201ENST00000526271 KIAA1551Q9HCM1 1747 aa19.97■□□□□ 0.79
CPSF1-201ENST00000526271 SENP3-EIF4A1A0A087X0R7 540 aa19.97■□□□□ 0.79
CPSF1-201ENST00000526271 SLC24A1O60721 1099 aa19.97■□□□□ 0.79
CPSF1-201ENST00000526271 EYA1Q99502 592 aa19.97■□□□□ 0.79
CPSF1-201ENST00000526271 MSH5O43196 834 aa19.96■□□□□ 0.79
CPSF1-201ENST00000526271 LINC00116Q8NCU8 138 aa19.96■□□□□ 0.79
CPSF1-201ENST00000526271 WASHC2AQ641Q2 1341 aa19.95■□□□□ 0.78
CPSF1-201ENST00000526271 ITPK1Q13572 414 aa19.94■□□□□ 0.78
CPSF1-201ENST00000526271 POLKQ9UBT6 870 aa19.94■□□□□ 0.78
CPSF1-201ENST00000526271 ADCY9O60503 1353 aa19.94■□□□□ 0.78
CPSF1-201ENST00000526271 ATP10DQ9P241 1426 aa19.93■□□□□ 0.78
CPSF1-201ENST00000526271 ASAP1Q9ULH1 1129 aa19.92■□□□□ 0.78
CPSF1-201ENST00000526271 CD2APQ9Y5K6 639 aa19.92■□□□□ 0.78
CPSF1-201ENST00000526271 SLC4A9Q96Q91 983 aa19.91■□□□□ 0.78
CPSF1-201ENST00000526271 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.9■□□□□ 0.78
CPSF1-201ENST00000526271 LOC102724428A0A0B4J2F2 783 aa19.9■□□□□ 0.78
CPSF1-201ENST00000526271 SIK1P57059 783 aa19.9■□□□□ 0.78
CPSF1-201ENST00000526271 KDRP35968 1356 aa19.9■□□□□ 0.78
CPSF1-201ENST00000526271 KIF13BQ9NQT8 1826 aa19.9■□□□□ 0.78
CPSF1-201ENST00000526271 PPM1GO15355 546 aaPredicted RBP19.89■□□□□ 0.77
CPSF1-201ENST00000526271 GIGYF1O75420 1035 aaPredicted RBP19.89■□□□□ 0.77
CPSF1-201ENST00000526271 PHF14O94880 888 aa19.89■□□□□ 0.77
CPSF1-201ENST00000526271 PHKG2P15735 406 aa19.89■□□□□ 0.77
CPSF1-201ENST00000526271 COL5A3P25940 1745 aaPredicted RBP19.89■□□□□ 0.77
CPSF1-201ENST00000526271 MYH14Q7Z406 1995 aaKnown RBP19.89■□□□□ 0.77
CPSF1-201ENST00000526271 WWC3Q9ULE0 1092 aa19.89■□□□□ 0.77
CPSF1-201ENST00000526271 GRIN3BO60391 1043 aa19.88■□□□□ 0.77
CPSF1-201ENST00000526271 EIF4A2Q14240 407 aaKnown RBP19.88■□□□□ 0.77
CPSF1-201ENST00000526271 SMARCC1Q92922 1105 aaPredicted RBP19.88■□□□□ 0.77
CPSF1-201ENST00000526271 ATG3Q9NT62 314 aa19.88■□□□□ 0.77
CPSF1-201ENST00000526271 CDCA8Q53HL2 280 aa19.87■□□□□ 0.77
CPSF1-201ENST00000526271 FLAD1Q8NFF5 587 aa19.87■□□□□ 0.77
CPSF1-201ENST00000526271 AK7Q96M32 723 aa19.87■□□□□ 0.77
CPSF1-201ENST00000526271 N4BP2Q86UW6 1770 aaPredicted RBP19.86■□□□□ 0.77
CPSF1-201ENST00000526271 IGSF1Q8N6C5 1336 aa19.86■□□□□ 0.77
CPSF1-201ENST00000526271 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.86■□□□□ 0.77
CPSF1-201ENST00000526271 ZNF831Q5JPB2 1677 aa19.86■□□□□ 0.77
CPSF1-201ENST00000526271 CICQ96RK0 1608 aaPredicted RBP19.86■□□□□ 0.77
CPSF1-201ENST00000526271 TRIM26Q12899 539 aaPredicted RBP19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms